Evidence map›Paper›PMID 34669105›Full record

ArticleMycopathologia2021

Nanopore Genome Sequencing and Variant Analysis of the Susceptible Candida auris Strain L1537/2020, Salvador, Brazil.

Auke W de Jong, Elaine C Francisco, João Nóbrega de Almeida, Igor B Brandão, Felicidade M Pereira, Pedro H Presta Dias, Magda M de Miranda Costa, Regiane T de Souza Jordão, Duong Vu, Arnaldo L Colombo and 1 more

Abstract read
In one paragraph

Article in Mycopathologia, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Infection & chemotherapy · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Auke W de Jong *Department of Medical Mycology, Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, NL-3584CT, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-0914-4612
Elaine C Francisco *Department of Medical Mycology, Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, NL-3584CT, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0002-5530-1332
João Nóbrega de AlmeidaLaboratório Especial de Micologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-3766-026X
Igor B BrandãoComissão de Controle de Infecção Hospitalar, Hospital de Bahia, Salvador, Brazil.
Felicidade M PereiraLaboratório Central de Saúde Pública Professor Gonçalo Muniz, Salvador, Brazil.ORCID http://orcid.org/0000-0002-6938-161X
Pedro H Presta DiasCentro de Informações Estratégicas de Vigilância em Saúde da Bahia, Salvador, Brazil.ORCID http://orcid.org/0000-0002-7066-1969
Magda M de Miranda CostaAgência Nacional de Vigilância Sanitária, Brasília, Brazil.
Regiane T de Souza JordãoCoordenação Geral de Laboratórios de Saúde Pública, Ministério da Saúde, Brasília, Brazil.
Duong VuDepartment of Medical Mycology, Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, NL-3584CT, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-7960-2765
Arnaldo L ColomboLaboratório Especial de Micologia, Disciplina de Infectologia, Universidade Federal de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-0793-8491
Ferry HagenDepartment of Medical Mycology, Westerdijk Fungal Biodiversity Institute, Uppsalalaan 8, NL-3584CT, Utrecht, The Netherlands. f.hagen@wi.knaw.nl.ORCID http://orcid.org/0000-0002-5622-1916

Funding

sao paulo research foundation 2017/02203-7
6 · The paper itself

Abstract

Candida auris has been reported worldwide, but only in December 2020, the first strain from a COVID-19 patient in Brazil was isolated. Here, we describe the genome sequence of this susceptible C. auris strain and performed variant analysis of the genetic relatedness with strains from other geographic localities.

Indexed as

CandidiasisCOVID-19NanoporesAntifungal AgentsBrazilCandidaHumansMicrobial Sensitivity TestsSARS-CoV-2Antifungal AgentsCandida aurisDe novo genome assemblyEmerging pathogenNanopore sequencingVariant calling

Identifiers

PMID34669105
PMCPMC8527438

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.