Evidence map›Paper›PMID 34667447›Full record

ArticleJournal of applied crystallography2021

Data reduction for serial crystallography using a robust peak finder.

Marjan Hadian-Jazi, Alireza Sadri, Anton Barty, Oleksandr Yefanov, Marina Galchenkova, Dominik Oberthuer, Dana Komadina, Wolfgang Brehm, Henry Kirkwood, Grant Mills and 9 more

Abstract read
In one paragraph

Article in Journal of applied crystallography, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Explainable machine learning for diffraction patterns.Journal of applied crystallography · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Marjan Hadian-JaziARC Centre of Excellence in Advanced Molecular Imaging, La Trobe Institute for Molecular Sciences, La Trobe University, Melbourne, Australia.ORCID https://orcid.org/0000-0002-1948-7491
Alireza SadriCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0002-4196-4186
Anton BartyCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.
Oleksandr YefanovCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0001-8676-0091
Marina GalchenkovaCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.
Dominik OberthuerCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0002-0894-9590
Dana KomadinaCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.
Wolfgang BrehmCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.
Henry KirkwoodEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.
Grant MillsEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.
Raphael de WijnEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.ORCID https://orcid.org/0000-0002-8342-1008
Romain LetrunEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.ORCID https://orcid.org/0000-0002-0569-5193
Marco KloosEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.
Mohammad VakiliEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.ORCID https://orcid.org/0000-0001-9776-0177
Luca GelisioCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0001-7832-6201
Connie DarmaninARC Centre of Excellence in Advanced Molecular Imaging, La Trobe Institute for Molecular Sciences, La Trobe University, Melbourne, Australia.
Adrian P MancusoEuropean XFEL, Holzkoppel 4, 22869 Schenefeld, Germany.
Henry N ChapmanCenter for Free-Electron Laser Science, Deutsches Elektronen-Synchrotron (DESY), Notkestrasse 85, 22607 Hamburg, Germany.ORCID https://orcid.org/0000-0002-4655-1743
Brian AbbeyARC Centre of Excellence in Advanced Molecular Imaging, La Trobe Institute for Molecular Sciences, La Trobe University, Melbourne, Australia.ORCID https://orcid.org/0000-0001-6504-0503

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A peak-finding algorithm for serial crystallography (SX) data analysis based on the principle of 'robust statistics' has been developed. Methods which are statistically robust are generally more insensitive to any departures from model assumptions and are particularly effective when analysing mixtures of probability distributions. For example, these methods enable the discretization of data into a group comprising inliers (

Indexed as

Bragg peak findingdata reductionrobust statisticsserial crystallography

Identifiers

PMID34667447
PMCPMC8493619

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.