Evidence map›Paper›PMID 34667258›Full record

ArticleNPJ precision oncology2021

Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies.

Marilyne Labrie, Allen Li, Allison Creason, Courtney Betts, Jamie Keck, Brett Johnson, Shamilene Sivagnanam, Christopher Boniface, Hongli Ma, Aurora Blucher and 18 more

Open access · goldAbstract read
In one paragraph

Article in NPJ precision oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 24 citations in OpenAlex.

  1. TALAVE in Breast Cancer:bioRxiv : the preprint server for biology · 2026
    Article
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  5. Review
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  8. Theranostics · 2024
    Article
  9. The Breast Cancer Proteome and Precision Oncology.Cold Spring Harbor perspectives in medicine · 2023
    Review
  10. Article
  11. Review
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  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 2 institutions in 1 country.

Marilyne LabrieKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA. labriem@ohsu.edu.ORCID http://orcid.org/0000-0003-3957-5533
Allen LiKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-7482-8204
Allison CreasonComputational Biology Program, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-5724-1276
Courtney BettsDepartment of Cell, Developmental & Cancer Biology, Oregon Health and Science University, Portland, OR, USA.
Jamie KeckKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Brett JohnsonKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-6810-551X
Shamilene SivagnanamKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-5966-1522
Christopher BonifaceDepartment of Molecular and Medical Genetics, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0003-0130-7517
Hongli MaKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Aurora BlucherKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Young Hwan ChangComputational Biology Program, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-8764-1959
Koei ChinCenter for Spatial Systems Biomedicine (OCSSB), Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-8061-7462
Jacqueline VukyKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Alexander R GuimaraesKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Molly DowneyDepartment of Diagnostic Radiology, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-5212-2286
Jeong Youn LimKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Lina GaoKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Kiara SiexKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Swapnil ParmarKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Annette KolodzieKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0002-9606-6500
Paul T SpellmanKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Jeremy GoecksComputational Biology Program, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0002-4583-5226
Lisa M CoussensKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0003-2389-1865
Christopher L CorlessKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Raymond BerganKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-8690-4876
Joe W GrayKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.ORCID http://orcid.org/0000-0001-9225-6756
Gordon B MillsKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA.
Zahi I MitriKnight Cancer Institute, Oregon Health and Science University, Portland, OR, USA. mitri@ohsu.edu.ORCID http://orcid.org/0000-0001-8765-7723
Oregon Health & Science University · USThe University of Texas MD Anderson Cancer Center · US

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Grace B Gill · 1997 to 2026
$60.5M
OutreachU54HG008100 · NHGRI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GRAY, JOE W., HEISER, LAURA MADELINE · 2014 to 2019
$10.5M
Understanding the Impact of Microscale and Nanoscale Heterogeneity and ResistanceU54CA209988 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DEMIR, EMEK, HEISER, LAURA MADELINE · 2017 to 2021
$10.3M
Omic and Multidimensional Spatial Atlas of Metastatic Breast CancerU2CCA233280 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOECKS, JEREMY · 2018 to 2023
$9.7M
Measuring Gender in the Healthy Oregon ProjectU01CA232819 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI SHANNON, JACKILEN, SPELLMAN, PAUL T. · 2020 to 2023
$6.3M
Quantitation of protein interactions in cancer cellsR01GM086688 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRUCE, JAMES EDWARD · 2009 to 2019
$4.2M
A Federated Galaxy for user-friendly large-scale cancer genomics researchU24CA231877 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOECKS, JEREMY, SCHATZ, MICHAEL · 2018 to 2022
$3.9M
Integrative bioinformatics and functional characterization of oncogenic driver aberrations in cancerU01CA217842 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI DENEEN, BENJAMIN, MILLS, GORDON B. · 2017 to 2021
$3.6M
Intratumor heterogeneity underlying treatment resistance in HER2+ breast tumorsU01CA195469 · NCI · DANA-FARBER CANCER INST · PI GRAY, JOE W., MICHOR, FRANZISKA · 2015 to 2019
$3.3M
Integrative approach to heterogeneity in breast cancer metastasisU01CA199315 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOGA, ANDREI, SPELLMAN, PAUL T. · 2016 to 2020
$3.2M
OHSU Center for Specialized Data Analysis as part of the GDANU24CA210957 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DEMIR, EMEK, SPELLMAN, PAUL T. · 2016 to 2020
$2.2M
Magnetic Resonance (MR) Fingerprinting for Quantification of Pancreatic Tumor MicrovasculatureR01DK117459 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GUIMARAES, ALEXANDER SAVIO RAMOS · 2019 to 2022
$1.4M
BLRD VA I01 BX002842NCI NIH HHS P30 CA069533NCI NIH HHS U01 CA195469NCI NIH HHS U01 CA199315NCI NIH HHS U01 CA217842NCI NIH HHS U01 CA232819NCI NIH HHS U24 CA210957NCI NIH HHS U24 CA231877NCI NIH HHS U2C CA233280NCI NIH HHS U54 CA209988NHGRI NIH HHS U54 HG008100NIDDK NIH HHS R01 DK117459NIGMS NIH HHS R01 GM086688
6 · The paper itself

Abstract

In a pilot study, we evaluated the feasibility of real-time deep analysis of serial tumor samples from triple negative breast cancer patients to identify mechanisms of resistance and treatment opportunities as they emerge under therapeutic stress engendered by poly-ADP-ribose polymerase (PARP) inhibitors (PARPi). In a BRCA-mutant basal breast cancer exceptional long-term survivor, a striking tumor destruction was accompanied by a marked infiltration of immune cells containing CD8 effector cells, consistent with pre-clinical evidence for association between STING mediated immune activation and benefit from PARPi and immunotherapy. Tumor cells in the exceptional responder underwent extensive protein network rewiring in response to PARP inhibition. In contrast, there were minimal changes in the ecosystem of a luminal androgen receptor rapid progressor, likely due to indifference to the effects of PARP inhibition. Together, identification of PARPi-induced emergent changes could be used to select patient specific combination therapies, based on tumor and immune state changes.

Identifiers

PMID34667258
PMCPMC8526613
OpenAlexW3206950501

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.