Evidence map›Paper›PMID 34667153›Full record

ArticleNature communications2021

Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis.

Saurabh J Pradhan, Puli Chandramouli Reddy, Michael Smutny, Ankita Sharma, Keisuke Sako, Meghana S Oak, Rini Shah, Mrinmoy Pal, Ojas Deshpande, Greg Dsilva and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Saurabh J PradhanCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.ORCID 0000-0002-5306-9138
Puli Chandramouli ReddyCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.ORCID 0000-0002-7732-0331
Michael SmutnyInstitute of Science and Technology Austria, Klosterneuburg, Austria.
Ankita SharmaCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.ORCID 0000-0002-4757-9115
Keisuke SakoInstitute of Science and Technology Austria, Klosterneuburg, Austria.ORCID 0000-0002-6453-8075
Meghana S OakIndian Institute of Science Education and Research, Kolkata, 741246, India.
Rini ShahCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.
Mrinmoy PalCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.ORCID 0000-0003-4499-5436
Ojas DeshpandeCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.ORCID 0000-0001-8589-7790
Greg DsilvaCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India.ORCID 0000-0003-3337-8280
Yin TangDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.
Rakesh MishraCentre for Cellular and Molecular Biology, Uppal Road, Hyderabad, India.ORCID 0000-0001-6636-7380
Girish DeshpandeDepartment of Molecular Biology, Princeton University, Princeton, NJ, 08540, USA.
Antonio J GiraldezDepartment of Genetics, Yale University School of Medicine, New Haven, CT, USA.ORCID 0000-0002-6823-137X
Mahendra SonawaneDepartment of Biological Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Mumbai, 400 005, India.
Carl-Philipp HeisenbergInstitute of Science and Technology Austria, Klosterneuburg, Austria. heisenberg@ist.ac.at.ORCID 0000-0002-0912-4566
Sanjeev GalandeCentre of Excellence in Epigenetics, Department of Biology, Indian Institute of Science Education and Research, Pune, 411008, India. sanjeev@iiserpune.ac.in.ORCID 0000-0002-7251-1905
Indian Institute of Science Education and Research Pune · INInstitute of Science and Technology Austria · ATTata Institute of Fundamental Research · INYale University · USCentre for Cellular and Molecular Biology · INIndian Institute of Science Education and Research Kolkata · INPrinceton University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
NCATS NIH HHS UL1 TR001863Wellcome Trust
6 · The paper itself

Abstract

Zygotic genome activation (ZGA) initiates regionalized transcription underlying distinct cellular identities. ZGA is dependent upon dynamic chromatin architecture sculpted by conserved DNA-binding proteins. However, the direct mechanistic link between the onset of ZGA and the tissue-specific transcription remains unclear. Here, we have addressed the involvement of chromatin organizer Satb2 in orchestrating both processes during zebrafish embryogenesis. Integrative analysis of transcriptome, genome-wide occupancy and chromatin accessibility reveals contrasting molecular activities of maternally deposited and zygotically synthesized Satb2. Maternal Satb2 prevents premature transcription of zygotic genes by influencing the interplay between the pluripotency factors. By contrast, zygotic Satb2 activates transcription of the same group of genes during neural crest development and organogenesis. Thus, our comparative analysis of maternal versus zygotic function of Satb2 underscores how these antithetical activities are temporally coordinated and functionally implemented highlighting the evolutionary implications of the biphasic and bimodal regulation of landmark developmental transitions by a single determinant.

Indexed as

AnimalsChromatinEmbryonic DevelopmentFemaleGene Expression Regulation, DevelopmentalMaleMatrix Attachment Region Binding ProteinsTranscription FactorsTranscriptomeVertebratesZebrafishZebrafish ProteinsZygoteChromatinMatrix Attachment Region Binding ProteinsSatb2 protein, zebrafishTranscription FactorsZebrafish Proteins

Identifiers

PMID34667153
PMCPMC8526749
OpenAlexW3206035942

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.