Evidence map›Paper›PMID 34665847›Full record

ArticlePLoS pathogens2021

Bile acid-independent protection against Clostridioides difficile infection.

Andrea Martinez Aguirre, Nazli Yalcinkaya, Qinglong Wu, Alton Swennes, Mary Elizabeth Tessier, Paul Roberts, Fabio Miyajima, Tor Savidge, Joseph A Sorg

Abstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed.

  1. Review
  2. Review
  3. A programmed reset mechanism primesScience advances · 2026
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  6. Apple Pomace Fermented with Non-International journal of molecular sciences · 2026
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  9. Gut microbes · 2025
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  13. Unravelling three-way interactions betweenJournal of medical microbiology · 2025
    Review
  14. Review
  15. Review
  16. Article
  17. Phenotypic analysis of variousApplied and environmental microbiology · 2025
    Article
  18. Article
  19. Advances in Fecal Microbiota Transplantation for Gut Dysbiosis-Related Diseases.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  20. EmergingmSystems · 2025
    Article

14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Andrea Martinez AguirreDepartment of Biology, Texas A&M University, College Station, Texas, United States of America.ORCID 0000-0002-4569-198X
Nazli YalcinkayaBaylor College of Medicine & Texas Children's Hospital, Houston, Texas, United States of America.
Qinglong WuBaylor College of Medicine & Texas Children's Hospital, Houston, Texas, United States of America.
Alton SwennesBaylor College of Medicine & Texas Children's Hospital, Houston, Texas, United States of America.
Mary Elizabeth TessierBaylor College of Medicine & Texas Children's Hospital, Houston, Texas, United States of America.ORCID 0000-0002-0341-5442
Paul RobertsRoyal Liverpool and Broadgreen University Hospitals NHS Trust, Liverpool, United Kingdom.ORCID 0000-0002-5609-1138
Fabio MiyajimaRoyal Liverpool and Broadgreen University Hospitals NHS Trust, Liverpool, United Kingdom.ORCID 0000-0002-1347-4825
Tor SavidgeBaylor College of Medicine & Texas Children's Hospital, Houston, Texas, United States of America.
Joseph A SorgDepartment of Biology, Texas A&M University, College Station, Texas, United States of America.ORCID 0000-0001-7822-2656

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
Project 3: Functional Microbiome and Host Signatures in Transition from Commensal to pathogenP01AI152999 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARIAS, CESAR AUGUSTO · 2020 to 2025
$12.0M
Decoding Antibiotic-induced Susceptibility to Clostridium difficile InfectionU01AI124290 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI BRITTON, ROBERT A, GAREY, KEVIN W · 2016 to 2020
$7.9M
PATHWAYS TO NEW BIOMARKERS IN RECURRENT ABDOMINAL PAIN IN CHILDRENR01NR013497 · NINR · BAYLOR COLLEGE OF MEDICINE · PI SAVIDGE, TOR C. · 2012 to 2024
$4.7M
Mechanisms of Clostridium difficile spore germinationR01AI116895 · NIAID · TEXAS A&M UNIVERSITY · PI SORG, JOE · 2015 to 2024
$3.9M
The LiaFSR system and antimicrobial peptide resistance in enterococciR01AI134637 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Cesar Augusto Arias · 2018 to 2026
$3.7M
Allosteric therapy of the Clostridium difficile toxinsR01AI100914 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI SAVIDGE, TOR C. · 2012 to 2016
$1.9M
POR Program on Genomic Prediction of Antimicrobial Resistance in VREK24AI121296 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARIAS, CESAR AUGUSTO · 2016 to 2025
$1.5M
NIAID NIH HHS K24 AI121296NIAID NIH HHS P01 AI152999NIAID NIH HHS R01 AI100914NIAID NIH HHS R01 AI116895NIAID NIH HHS R01 AI134637NIAID NIH HHS U01 AI124290NIDDK NIH HHS P30 DK056338NINR NIH HHS R01 NR013497
6 · The paper itself

Abstract

Clostridioides difficile infections occur upon ecological / metabolic disruptions to the normal colonic microbiota, commonly due to broad-spectrum antibiotic use. Metabolism of bile acids through a 7α-dehydroxylation pathway found in select members of the healthy microbiota is regarded to be the protective mechanism by which C. difficile is excluded. These 7α-dehydroxylated secondary bile acids are highly toxic to C. difficile vegetative growth, and antibiotic treatment abolishes the bacteria that perform this metabolism. However, the data that supports the hypothesis that secondary bile acids protect against C. difficile infection is supported only by in vitro data and correlative studies. Here we show that bacteria that 7α-dehydroxylate primary bile acids protect against C. difficile infection in a bile acid-independent manner. We monoassociated germ-free, wildtype or Cyp8b1-/- (cholic acid-deficient) mutant mice and infected them with C. difficile spores. We show that 7α-dehydroxylation (i.e., secondary bile acid generation) is dispensable for protection against C. difficile infection and provide evidence that Stickland metabolism by these organisms consumes nutrients essential for C. difficile growth. Our findings indicate secondary bile acid production by the microbiome is a useful biomarker for a C. difficile-resistant environment but the microbiome protects against C. difficile infection in bile acid-independent mechanisms.

Indexed as

AnimalsBile Acids and SaltsClostridium InfectionsDisease ResistanceGastrointestinal MicrobiomeMiceMice, KnockoutBile Acids and Salts

Identifiers

PMID34665847
PMCPMC8555850

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.