ArticlemSystems2021
A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog.
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Article in mSystems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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36 citing papers in PubMed.
- Comprehensive analyses of archaeal viral genomes reveal genomic characteristics, divergence, and host interactions.Microbiome · 2026Article
- The Unified Human Virome Database: A toolkit for expanded human virome analysis.bioRxiv : the preprint server for biology · 2026Article
- The effects of bacteriophage cocktail treatment on healthy gut microbiota: anMicrobial genomics · 2026Article
- Distinct prophage infections in colorectal cancer-associated Bacteroides fragilis.Communications medicine · 2026Article
- Article
- Effects of bacteriophages on gut microbiome functionality.Gut microbes · 2025Review
- DNA extraction and virome processing methods strongly influence recovered human gut viral community characteristics.bioRxiv : the preprint server for biology · 2025Article
- A genomic atlas of the human gut virome elucidates genetic factors shaping host interactions.bioRxiv : the preprint server for biology · 2025Article
- Article
- Shotgun metagenomics on indoor air for surveillance of respiratory, enteric, and skin viruses in a Belgian daycare setting, January to December 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2025Article
- The genetic diversity and populational specificity of the human gut virome at single-nucleotide resolution.Microbiome · 2025Article
- Biases and complementarity in gut viromes obtained from bulk and virus-like particle-enriched metagenomic sequencing.Microbiology spectrum · 2025Article
- Gut virome: New key players in the pathogenesis of inflammatory bowel disease.World journal of methodology · 2025Review
- The Aggregated Gut Viral Catalogue (AVrC): A unified resource for exploring the viral diversity of the human gut.PLoS computational biology · 2025Article
- The Chinese gut virus catalogue reveals gut virome diversity and disease-related viral signatures.Genome medicine · 2025Article
- Identification and characterization ofMicrobiology spectrum · 2025Article
- Phage diversity in One Health.Essays in biochemistry · 2024Review
- Longitudinal analysis of the enteric virome in paediatric subjects from the Free State Province, South Africa, reveals early gut colonisation and temporal dynamics.Virus research · 2024Article
- VirRep: a hybrid language representation learning framework for identifying viruses from human gut metagenomes.Genome biology · 2024Article
- Characterization of the gut bacterial and viral microbiota in latent autoimmune diabetes in adults.Scientific reports · 2024Article
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Authors and funding
22 authors.
Lore Van Espen *KU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.ORCID 0000-0002-3870-4551
Emilie Glad Bak *The Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Leen BellerKU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.
Lila CloseKU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.
Ward DeboutteKU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.ORCID 0000-0002-3829-1056
Helene Bæk JuelThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Trine NielsenThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Deniz SinarKU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.
Lander De ConinckKU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.
Christine Frithioff-BøjsøeThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Cilius Esmann FonvigThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Suganya JacobsenDepartment of Gastroenterology and Hepatology, Centre for Liver Research, Odense University Hospitalgrid.7143.1, Odense, Denmark.
Maria KjærgaardDepartment of Gastroenterology and Hepatology, Centre for Liver Research, Odense University Hospitalgrid.7143.1, Odense, Denmark.
Maja ThieleDepartment of Gastroenterology and Hepatology, Centre for Liver Research, Odense University Hospitalgrid.7143.1, Odense, Denmark.
Anthony FullamStructural and Computational Biology Unit, European Molecular Biology Laboratorygrid.4709.a, Heidelberg, Germany.
Michael KuhnStructural and Computational Biology Unit, European Molecular Biology Laboratorygrid.4709.a, Heidelberg, Germany.
Jens-Christian HolmThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Peer BorkStructural and Computational Biology Unit, European Molecular Biology Laboratorygrid.4709.a, Heidelberg, Germany.
Aleksander KragDepartment of Gastroenterology and Hepatology, Centre for Liver Research, Odense University Hospitalgrid.7143.1, Odense, Denmark.
Torben HansenThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.
Manimozhiyan ArumugamThe Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagengrid.5254.6, Copenhagen, Denmark.ORCID 0000-0002-0886-9101
Jelle MatthijnssensKU Leuven, Department of Microbiology, Immunology, & Transplantation, Rega Institute, Division of Clinical & Epidemiological Virology, Laboratory of Viral Metagenomics, Leuven, Belgium.ORCID 0000-0003-1188-9733
Funding
European Union's Horizon2020 668031Fonds Wetenschappelijk Onderzoek (FWO) 1S25720NFonds Wetenschappelijk Onderzoek (FWO) 1S61618NInnovation Fund Denmark 0603-00484BNovo Nordisk Foundation NNF15OC0016544Novo Nordisk Foundation NNF15OC0016692Novo Nordisk Foundation NNF18CC0034900Region Zealand Health Scientific Research Foundation
Abstract
Gut viruses are important, yet often neglected, players in the complex human gut microbial ecosystem. Recently, the number of human gut virome studies has been increasing; however, we are still only scratching the surface of the immense viral diversity. In this study, 254 virus-enriched fecal metagenomes from 204 Danish subjects were used to generate the
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healthy gut viromeshuman gut viromephagesvirome catalog
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