Evidence map›Paper›PMID 34664721›Full record

ArticleInternational journal of cancer2022

Oral and gastric microbiome in relation to gastric intestinal metaplasia.

Fen Wu, Liying Yang, Yuhan Hao, Boyan Zhou, Jiyuan Hu, Yaohua Yang, Sukhleen Bedi, Navin Ganesh Sanichar, Charley Cheng, Guillermo Perez-Perez and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of cancer, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. The emerging role of non-Gastroenterology report · 2026
    Review
  6. Article
  7. Signaling pathways and targeted interventions for precancers.Signal transduction and targeted therapy · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. Detection ofBioanalysis · 2025
    Article
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  13. Article
  14. Review
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  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 6 institutions in 1 country.

Fen WuDepartment of Population Health, New York University School of Medicine, New York, New York, USA.ORCID 0000-0003-0997-0890
Liying YangDepartment of Medicine, New York University School of Medicine, New York, New York, USA.
Yuhan HaoDepartment of Biology, New York University, New York, New York, USA.
Boyan ZhouDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Jiyuan HuDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Yaohua YangDepartment of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA.ORCID 0000-0002-3815-7172
Sukhleen BediDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Navin Ganesh SanicharDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Charley ChengDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Guillermo Perez-PerezDepartment of Medicine, New York University School of Medicine, New York, New York, USA.
Wenche TsengDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Wenzhi TsengAmherst College, Amherst, Massachusetts, USA.
Mengkao TsengDepartment of Medicine, New York University School of Medicine, New York, New York, USA.
Fritz FrancoisDepartment of Medicine, New York University School of Medicine, New York, New York, USA.
Abraham R KhanDepartment of Medicine, New York University School of Medicine, New York, New York, USA.
Yihong LiDepartment of Microbiology and Immunology, Cornell University Master of Public Health Program, Ithaca, New York, USA.
Martin J BlaserCenter for Advanced Biotechnology and Medicine, Rutgers University, Piscataway, New Jersey, USA.
Xiao-Ou ShuDepartment of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Jirong LongDepartment of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, Tennessee, USA.
Huilin LiDepartment of Population Health, New York University School of Medicine, New York, New York, USA.
Zhiheng PeiDepartment of Medicine, New York University School of Medicine, New York, New York, USA.
Yu ChenDepartment of Population Health, New York University School of Medicine, New York, New York, USA.ORCID 0000-0002-1519-4894
New York University · USVanderbilt University Medical Center · USAmherst College · USCornell University · USRutgers, The State University of New Jersey · USVA NY Harbor Healthcare System · US

Funding

Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
True Metal fac coreP30ES009089 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MATTHEW S PERZANOWSKI · 1998 to 2026
$44.7M
RESEARCH IN ENVIRONMENTAL HEALTH SCIENCES (CENTER GRANT)P30ES000260 · NIEHS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZELIKOFF, JUDITH TERRY · 1985 to 2020
$26.1M
Foregut Microbiome and Risk of Gastric Intestinal Metaplasia, and Gastric Cancer RiskR01CA204113 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHEN, YU, PEI, ZHIHENG · 2016 to 2020
$3.8M
Novel Statistical Methods in Analyzing Microbiome Data for Longitudinal StudyR01DK110014 · NIDDK · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LI, HUILIN · 2016 to 2019
$1.5M
NCI NIH HHS R01 CA204113NIDDK NIH HHS R01 DK110014NIEHS NIH HHS P30 ES000260NIEHS NIH HHS P30 ES009089NIEHS NIH HHS P42 ES010349
6 · The paper itself

Abstract

Evidence suggests that Helicobacter pylori plays a role in gastric cancer (GC) initiation. However, epidemiologic studies on the specific role of other bacteria in the development of GC are lacking. We conducted a case-control study of 89 cases with gastric intestinal metaplasia (IM) and 89 matched controls who underwent upper gastrointestinal endoscopy at three sites affiliated with NYU Langone Health. We performed shotgun metagenomic sequencing using oral wash samples from 89 case-control pairs and antral mucosal brushing samples from 55 case-control pairs. We examined the associations of relative abundances of bacterial taxa and functional pathways with IM using conditional logistic regression with and without elastic-net penalty. Compared with controls, oral species Peptostreptococcus stomatis, Johnsonella ignava, Neisseria elongata and Neisseria flavescens were enriched in cases (odds ratios [ORs] = 1.29-1.50, P = .004-.01) while Lactobacillus gasseri, Streptococcus mutans, S parasanguinis and S sanguinis were under-represented (ORs = 0.66-0.76, P = .006-.042) in cases. Species J ignava and Filifactor alocis in the gastric microbiota were enriched (ORs = 3.27 and 1.43, P = .005 and .035, respectively), while S mutans, S parasanguinis and S sanguinis were under-represented (ORs = 0.61-0.75, P = .024-.046), in cases compared with controls. The lipopolysaccharide and ubiquinol biosynthesis pathways were more abundant in IM, while the sugar degradation pathways were under-represented in IM. The findings suggest potential roles of certain oral and gastric microbiota, which are correlated with regulation of pathways associated with inflammation, in the development of gastric precancerous lesions.

Indexed as

AgedCase-Control StudiesFemaleGastric MucosaGastrointestinal MicrobiomeHelicobacter pyloriHumansMaleMetagenomicsMetaplasiaMiddle AgedMouth MucosaPrecancerous ConditionsStomach Neoplasmscase-control studygastric intestinal metaplasiagastric microbiomeoral microbiomeshotgun metagenomic sequencing

Identifiers

PMID34664721
PMCPMC8770574
OpenAlexW3205244003

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.