Evidence map›Paper›PMID 34663977›Full record

ArticleNature immunology2021

Altered ISGylation drives aberrant macrophage-dependent immune responses during SARS-CoV-2 infection.

Deeksha Munnur, Qiwen Teo, Denzel Eggermont, Horace H Y Lee, Fabien Thery, Julian Ho, Sophie Wilhelmina van Leur, Wilson W S Ng, Lewis Y L Siu, Antje Beling and 7 more

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Nature immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 144 citations in OpenAlex.

  1. Review
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  7. From bats to humans: uncoveringbioRxiv : the preprint server for biology · 2026
    Article
  8. Article
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  11. Cytokine storm.Nature reviews. Disease primers · 2026
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. ISG-15, beyond its functions in the cell: a mini review.Cellular and molecular life sciences : CMLS · 2025
    Review
  18. Article
  19. Article
  20. Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 6 countries.

Deeksha Munnur *Sir William Dunn School of Pathology, South Parks Road, University of Oxford, Oxford, UK.
Qiwen Teo *HKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, Hong Kong.
Denzel Eggermont *VIB-UGent Center for Medical Biotechnology, Ghent, Belgium.ORCID http://orcid.org/0000-0002-3940-7583
Horace H Y Lee *HKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, Hong Kong.ORCID http://orcid.org/0000-0003-4360-9986
Fabien TheryVIB-UGent Center for Medical Biotechnology, Ghent, Belgium.ORCID http://orcid.org/0000-0001-5007-0371
Julian HoHKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, Hong Kong.
Sophie Wilhelmina van LeurSir William Dunn School of Pathology, South Parks Road, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-0411-6102
Wilson W S NgHKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, Hong Kong.
Lewis Y L SiuHKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, Hong Kong.
Antje BelingCharité-Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Biochemistry, Berlin, Germany.ORCID http://orcid.org/0000-0002-1826-5248
Hidde PloeghBoston Children's Hospital and Harvard Medical School, Boston, MA, USA.
Adan Pinto-FernandezMass Spectrometry Laboratory, Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Andreas DamianouMass Spectrometry Laboratory, Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Benedikt KesslerMass Spectrometry Laboratory, Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-8160-2446
Francis ImpensVIB-UGent Center for Medical Biotechnology, Ghent, Belgium. francis.impens@vib-ugent.be.
Chris Ka Pun MokHKU-Pasteur Research Pole, School of Public Health, Li Ka Shing Faculty of Medicine, University of Hong Kong, Hong Kong SAR, Hong Kong. kapunmok@cuhk.edu.hk.ORCID http://orcid.org/0000-0002-0525-6772
Sumana SanyalSir William Dunn School of Pathology, South Parks Road, University of Oxford, Oxford, UK. sumana.sanyal@path.ox.ac.uk.ORCID http://orcid.org/0000-0002-6230-5366
University of Oxford · GBHKU-Pasteur Research Pole · HKGhent University · BEBoston Children's Hospital · USChinese University of Hong Kong · HKEducation University of Hong Kong · HKHumboldt-Universität zu Berlin · DEVIB-UGent Center for Medical Biotechnology · BE

Funding

Food and Health Bureau of the Government of the Hong Kong Special Administrative Region | Health and Medical Research Fund (HMRF) 17161202RCUK | Medical Research Council (MRC) MC_PC_19063Wellcome Trust (Wellcome) 220776/Z/20/Z
6 · The paper itself

Abstract

Ubiquitin-like protein ISG15 (interferon-stimulated gene 15) (ISG15) is a ubiquitin-like modifier induced during infections and involved in host defense mechanisms. Not surprisingly, many viruses encode deISGylating activities to antagonize its effect. Here we show that infection by Zika, SARS-CoV-2 and influenza viruses induce ISG15-modifying enzymes. While influenza and Zika viruses induce ISGylation, SARS-CoV-2 triggers deISGylation instead to generate free ISG15. The ratio of free versus conjugated ISG15 driven by the papain-like protease (PLpro) enzyme of SARS-CoV-2 correlates with macrophage polarization toward a pro-inflammatory phenotype and attenuated antigen presentation. In vitro characterization of purified wild-type and mutant PLpro revealed its strong deISGylating over deubiquitylating activity. Quantitative proteomic analyses of PLpro substrates and secretome from SARS-CoV-2-infected macrophages revealed several glycolytic enzymes previously implicated in the expression of inflammatory genes and pro-inflammatory cytokines, respectively. Collectively, our results indicate that altered free versus conjugated ISG15 dysregulates macrophage responses and probably contributes to the cytokine storms triggered by SARS-CoV-2.

Indexed as

Cell DifferentiationCoronavirus Papain-Like ProteasesCOVID-19CytokinesGene Knockdown TechniquesHeLa CellsHumansImmune EvasionImmunity, InnateInflammationInfluenza A virusInfluenza, HumanMacrophagesPluripotent Stem CellsSARS-CoV-2UbiquitinationCoronavirus Papain-Like ProteasesCytokinesISG15 protein, humanpapain-like protease, SARS-CoV-2Ubiquitins

Identifiers

PMID34663977
OpenAlexW3164741267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.