ArticleScientific reports2021
Genic microsatellite marker characterization and development in little millet (Panicum sumatrense) using transcriptome sequencing.
Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Cross-Transferability of SSR Markers from Rice to Little Millet (Panicum sumatrense Roth ex Roem. & Schult) for Genetic Diversity and DNA Fingerprinting.Biochemical genetics · 2026Article
- Role of Millets for Food Security Under Climate Change.Plant-environment interactions (Hoboken, N.J.) · 2026Review
- Little millet genome reveals evolutionary insights into tetraploid structure and genetic basis of micronutrient density.Nature communications · 2025Article
- The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture.Database : the journal of biological databases and curation · 2024Article
- Review
- Article
- Article
- Exploring the therapeutic mechanisms of millet in obesity through molecular docking, pharmacokinetics, and dynamic simulation.Frontiers in nutrition · 2024Article
- Review
- De novo transcriptome sequencing of drought tolerance-associated genes in little millet (Panicum sumatrense L.).Functional & integrative genomics · 2023Article
- Review
- LMTFrontiers in plant science · 2023Article
- Full-length transcriptome analysis ofPeerJ · 2023Article
- Application of MaxEnt Modeling and HRM Analysis to Support the Conservation and Domestication ofPlants (Basel, Switzerland) · 2022Article
- Whole-genome survey and phylogenetic analysis of Gadus macrocephalus.Bioscience reports · 2022Article
- Unravelling the treasure trove of drought-responsive genes in wild-type peanut through transcriptomics and physiological analyses of root.Functional & integrative genomics · 2022Article
- Finger millet RNA-seq reveals differential gene expression associated with tolerance to aluminum toxicity and provides novel genomic resources.Frontiers in plant science · 2022Article
- Identification and Characterization of DNA Demethylase Genes and Their Association With Thermal Stress in Wheat (Frontiers in genetics · 2022Article
- Revitalization of small millets for nutritional and food security by advanced genetics and genomics approaches.Frontiers in genetics · 2022Review
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Little millet is a climate-resilient and high-nutrient value plant. The lack of molecular markers severely limits the adoption of modern genomic approaches in millet breeding studies. Here the transcriptome of three samples were sequenced. A total of 4443 genic-SSR motifs were identified in 30,220 unigene sequences. SSRs were found at a rate of 12.25 percent, with an average of one SSR locus per 10 kb. Among different repeat motifs, tri-nucleotide repeat (66.67) was the most abundant one, followed by di- (27.39P), and tetra- (3.83P) repeats. CDS contained fewer motifs with the majority of tri-nucleotides, while 3' and 5' UTR carry more motifs but have shorter repeats. Functional annotation of unigenes containing microsatellites, revealed that most of them were linked to metabolism, gene expression regulation, and response to environmental stresses. Fifty primers were randomly chosen and validated in five little millet and 20 minor millet genotypes; 48% showed polymorphism, with a high transferability (70%) rate. Identified microsatellites can be a noteworthy resource for future research into QTL-based breeding, genetic resource conservation, MAS selection, and evolutionary genetics.
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