Evidence map›Paper›PMID 34663594›Full record

ArticleImmunoHorizons2021

Deficiencies in the DNA Binding Protein ARID3a Alter Chromatin Structures Important for Early Human Erythropoiesis.

Joshua Garton, Malini Shankar, Brittany Chapman, Kira Rose, Patrick M Gaffney, Carol F Webb

Open access · goldAbstract read
In one paragraph

Article in ImmunoHorizons, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Joshua GartonDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, OK.
Malini ShankarDepartment of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK.
Brittany ChapmanDepartment of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK.
Kira RoseDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK.
Patrick M GaffneyGenes and Human Disease Research Program, Oklahoma Medical Research Foundation, Oklahoma City, OK; and.
Carol F WebbDepartment of Medicine, University of Oklahoma Health Sciences Center, Oklahoma City, OK; carol-webb@ouhsc.edu.ORCID 0000-0003-4164-9634
University of Oklahoma Health Sciences Center · USOklahoma Medical Research Foundation · USUniversity of Oklahoma · US

Funding

Molecular Basis of Immunity - Kirschtein-NRSAT32AI007633 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI CUNNINGHAM, MADELEINE W. · 2001 to 2022
$4.0M
Role of the transcription factor ARID3a in innate immune responsesR01AI118836 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WEBB, CAROL F · 2017 to 2020
$1.5M
Role of the Transcription Factor ARID3a in Innate Immune ResponsesR56AI118836 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WEBB, CAROL F · 2015 to 2015
$370k
Identification of Proteins Interacting with ARID3aR03AI123951 · NIAID · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WEBB, CAROL F · 2016 to 2017
$148k
NIAID NIH HHS R01 AI118836NIAID NIH HHS R03 AI123951NIAID NIH HHS R56 AI118836NIAID NIH HHS T32 AI007633
6 · The paper itself

Abstract

ARID3a is a DNA-binding protein important for normal hematopoiesis in mice and for in vitro lymphocyte development in human cultures. ARID3a knockout mice die in utero with defects in both early hematopoietic stem cell populations and erythropoiesis. Recent transcriptome analyses in human erythropoietic systems revealed increases in ARID3a transcripts implicating potential roles for ARID3a in human erythrocyte development. However, ARID3a transcript levels do not faithfully reflect protein levels in many cells, and the functions and requirements for ARID3a protein in those systems have not been explored. We used the erythroleukemic cell line K562 as a model to elucidate functions of ARID3a protein in early human erythropoiesis. ARID3a knockdown of hemin-stimulated K562 cells resulted in lack of fetal globin production and modifications in gene expression. Temporal RNA sequencing data link ARID3a expression with the important erythroid regulators

Indexed as

ChromatinChromatin Immunoprecipitation SequencingCRISPR-Cas SystemsDNA-Binding ProteinsErythropoiesisFetal GlobulinsGene Expression Regulation, DevelopmentalGene Knockdown TechniquesHumansK562 CellsRNA-SeqTranscription FactorsARID3A protein, humanChromatinDNA-Binding ProteinsFetal GlobulinsTranscription Factors

Identifiers

PMID34663594
PMCPMC8900713
OpenAlexW3205717216

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.