Evidence map›Paper›PMID 34662904›Full record

ArticleBlood advances2021

NUDT15 variants confer high incidence of second malignancies in children with acute lymphoblastic leukemia.

Masanori Yoshida, Kazuhiko Nakabayashi, Wentao Yang, Aiko Sato-Otsubo, Shin-Ichi Tsujimoto, Hiroko Ogata-Kawata, Tomoko Kawai, Keisuke Ishiwata, Mika Sakamoto, Kohji Okamura and 37 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Guideline
  2. Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

47 authors at 19 institutions in 2 countries.

Masanori YoshidaDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0002-9171-7335
Kazuhiko NakabayashiDepartment of Maternal-Fetal Biology, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Wentao YangDepartment of Pharmacy and Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, USA.
Aiko Sato-OtsuboDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Shin-Ichi TsujimotoDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-5738-4138
Hiroko Ogata-KawataDepartment of Maternal-Fetal Biology, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0003-3421-8190
Tomoko KawaiDepartment of Maternal-Fetal Biology, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-8137-0334
Keisuke IshiwataDepartment of Maternal-Fetal Biology, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Mika SakamotoMedical Genome Center, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Kohji OkamuraDepartment of Systems BioMedicine, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-9747-5069
Kaoru YoshidaDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Ryota ShiraiDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0002-1015-3444
Tomoo OsumiDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-5536-6788
Takaya MoriyamaDepartment of Pharmacy and Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, USA.
Rina NishiiDepartment of Pharmacy and Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, USA.
Hiroyuki TakahashiDepartment of Pediatrics, Toho University, Tokyo, Japan.ORCID 0000-0001-8763-0280
Chikako KiyotaniChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.
Yoko ShiodaChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.
Keita TerashimaChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.
Sae IshimaruDepartment of Hematology/Oncology, Tokyo Metropolitan Children's Medical Center, Tokyo, Japan.
Yuki YuzaDepartment of Hematology/Oncology, Tokyo Metropolitan Children's Medical Center, Tokyo, Japan.
Masatoshi TakagiDepartment of Pediatrics and Developmental Biology, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University, Tokyo, Japan.
Yuki ArakawaDepartment of Hematology/Oncology, Saitama Children's Medical Center, Saitama, Japan.ORCID 0000-0003-3001-2240
Akitoshi KinoshitaDepartment of Pediatrics, St. Marianna University School of Medicine, Kawasaki, Japan.
Moeko HinoDepartment of Pediatrics, Chiba University Hospital, Chiba, Japan.
Toshihiko ImamuraDepartment of Pediatrics, Kyoto Prefectural University of Medicine, Graduate School of Medical Science, Kyoto, Japan.
Daisuke HasegawaDepartment of Pediatrics, St. Luke's International Hospital, Tokyo, Japan.
Yozo NakazawaDepartment of Pediatrics, Shinshu University School of Medicine, Matsumoto, Japan.ORCID 0000-0003-0793-815X
Mayuko OkuyaDepartment of Pediatrics, Dokkyo Medical University School of Medicine, Shimotsuga, Japan.
Harumi KakudaDepartment of Hematology/Oncology, Chiba Children's Hospital, Chiba, Japan.
Nao TakasugiDepartment of Pediatrics, Graduate School of Medicine, the University of Tokyo, Tokyo, Japan.
Akiko InoueDepartment of Pediatrics, Osaka Medical and Pharmaceutical University, Takatsuki, Japan.ORCID 0000-0002-6758-8254
Kentaro OhkiDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Takako YoshiokaDepartment of Pathology, National Center for Child Health and Development, Tokyo, Japan.
Shuichi ItoDepartment of Pediatrics, Graduate School of Medicine, Yokohama City University, Yokohama, Japan.ORCID 0000-0002-5242-8987
Daisuke TomizawaChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0003-1520-7007
Katsuyoshi KohDepartment of Hematology/Oncology, Saitama Children's Medical Center, Saitama, Japan.
Kimikazu MatsumotoChildren's Cancer Center, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0002-5340-3781
Masashi SanadaClinical Research Center, National Hospital Organization Nagoya Medical Center, Nagoya, Japan.
Nobutaka KiyokawaDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.
Akira OharaDepartment of Pediatrics, Toho University, Tokyo, Japan.
Seishi OgawaDepartment of Pathology and Tumor Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.ORCID 0000-0002-7778-5374
Atsushi ManabeDepartment of Pediatrics, Hokkaido University Graduate School of Medicine, Sapporo, Japan.
Akira NiwaDepartment of Clinical Application, Center for iPS Cell Research and Application, Kyoto University, Kyoto, Japan; and.ORCID 0000-0002-6412-2686
Kenichiro HataDepartment of Maternal-Fetal Biology, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0002-7809-7637
Jun J YangDepartment of Pharmacy and Pharmaceutical Sciences, St. Jude Children's Research Hospital, Memphis, USA.
Motohiro KatoDepartment of Pediatric Hematology and Oncology Research, Research Institute, National Center for Child Health and Development, Tokyo, Japan.ORCID 0000-0001-5145-1774
National Center For Child Health and Development · JPSt. Jude Children's Research Hospital · USKyoto University · JPSaitama Children's Medical Center · JPToho University · JPTokyo Metropolitan Children's Medical Center · JPChiba Hospital · JPChiba University Hospital · JPDokkyo Medical University · JPHokkaido University · JPKyoto Prefectural University of Medicine · JPNational Hospital Organization · JPOsaka University of Pharmaceutical Sciences · JPShinshu University · JPSt. Luke's International Hospital · JPSt. Marianna University School of Medicine · JPThe University of Tokyo · JPTokyo Medical and Dental University · JPYokohama City University · JP

Funding

Pharmacogenetics of Nucleobase and Nucleoside Analog DrugsR35GM141947 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI YANG, JUN J. · 2021 to 2025
$2.9M
Genetics-guided Individualization of Thiopurine TherapyR01GM118578 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI YANG, JUN J. · 2017 to 2020
$2.2M
NIGMS NIH HHS R01 GM118578NIGMS NIH HHS R35 GM141947
6 · The paper itself

Abstract

The effect of genetic variation on second malignant neoplasms (SMNs) remains unclear. First, we identified the pathogenic germline variants in cancer-predisposing genes among 15 children with SMNs after childhood leukemia/lymphoma using whole-exome sequencing. Because the prevalence was low, we focused on the association between SMNs and NUDT15 in primary acute lymphoblastic leukemia (ALL) cases. NUDT15 is one of the 6-mercaptopurine (6-MP) metabolic genes, and its variants are common in East Asian individuals. The prevalence of NUDT15 hypomorphic variants was higher in patients with SMNs (n = 14; 42.9%) than in the general population in the gnomAD database (19.7%; P = .042). In the validation study with a cohort of 438 unselected patients with ALL, the cumulative incidence of SMNs was significantly higher among those with (3.0%; 95% confidence interval [CI], 0.6% to 9.4%) than among those without NUDT15 variants (0.3%; 95% CI, 0.0% to 1.5%; P = .045). The 6-MP dose administered to patients with ALL with a NUDT15 variant was higher than that given to those without SMNs (P = .045). The 6-MP-related mutational signature was observed in SMN specimens after 6-MP exposure. In cells exposed to 6-MP, a higher level of 6-MP induced DNA damage in NUDT15-knockdown induced pluripotent stem cells. Our study indicates that NUDT15 variants may confer a risk of SMNs after treatment with 6-MP in patients with ALL.

Indexed as

Neoplasms, Second PrimaryPrecursor Cell Lymphoblastic Leukemia-LymphomaAntimetabolites, AntineoplasticChildHumansIncidencePyrophosphatasesAntimetabolites, AntineoplasticPyrophosphatases

Identifiers

PMID34662904
PMCPMC9153020
OpenAlexW3206989732

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.