Evidence map›Paper›PMID 34662237›Full record

ArticleJournal of bacteriology2022

Cellular Effects of 2',3'-Cyclic Nucleotide Monophosphates in Gram-Negative Bacteria.

Yashasvika Duggal, Jennifer E Kurasz, Benjamin M Fontaine, Nick J Marotta, Shikha S Chauhan, Anna C Karls, Emily E Weinert

Open access · hybridAbstract read
In one paragraph

Article in Journal of bacteriology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. At the Crossroad of Nucleotide Dynamics and Protein Synthesis in Bacteria.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  9. Genomic Distribution of Pro-VirulentInternational journal of molecular sciences · 2023
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Yashasvika Duggal *Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, USA.
Jennifer E Kurasz *Department of Microbiology, University of Georgiagrid.213876.9, Athens, Georgia, USA.
Benjamin M Fontaine *Department of Chemistry, Emory University, Atlanta, Georgia, USA.
Nick J MarottaMolecular, Cellular and Integrative Biosciences Program, Pennsylvania State University, University Park, Pennsylvania, USA.
Shikha S ChauhanDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Anna C KarlsDepartment of Microbiology, University of Georgiagrid.213876.9, Athens, Georgia, USA.ORCID 0000-0002-0198-1272
Emily E WeinertDepartment of Chemistry, Pennsylvania State University, University Park, Pennsylvania, USA.ORCID 0000-0002-4986-8682
Pennsylvania State University · USUniversity of Georgia · USEmory University · US

Funding

Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
Probing the Metabolism and Cellular Roles of 2',3'-Cyclic Nucleotide MonophosphateR01GM125842 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI WEINERT, EMILY E · 2018 to 2022
$1.6M
NIGMS NIH HHS 5R01GM125842NIGMS NIH HHS R01 GM125842NIH HHS P51 OD011132
6 · The paper itself

Abstract

Organismal adaptations to environmental stimuli are governed by intracellular signaling molecules such as nucleotide second messengers. Recent studies have identified functional roles for the noncanonical 2',3'-cyclic nucleotide monophosphates (2',3'-cNMPs) in both eukaryotes and prokaryotes. In Escherichia coli, 2',3'-cNMPs are produced by RNase I-catalyzed RNA degradation, and these cyclic nucleotides modulate biofilm formation through unknown mechanisms. The present work dissects cellular processes in E. coli and Salmonella enterica serovar Typhimurium that are modulated by 2',3'-cNMPs through the development of cell-permeable 2',3'-cNMP analogs and a 2',3'-cyclic nucleotide phosphodiesterase. Utilization of these chemical and enzymatic tools, in conjunction with phenotypic and transcriptomic investigations, identified pathways regulated by 2',3'-cNMPs, including flagellar motility and biofilm formation, and by oligoribonucleotides with 3'-terminal 2',3'-cyclic phosphates, including responses to cellular stress. Furthermore, interrogation of metabolomic and organismal databases has identified 2',3'-cNMPs in numerous organisms and homologs of the E. coli metabolic proteins that are involved in key eukaryotic pathways. Thus, the present work provides key insights into the roles of these understudied facets of nucleotide metabolism and signaling in prokaryotic physiology and suggest broad roles for 2',3'-cNMPs among bacteria and eukaryotes.

Indexed as

Bacterial ProteinsBiofilmsEndoribonucleasesEscherichia coliFlagellaGene Expression Regulation, BacterialHeat-Shock ResponseHydrogen PeroxideNucleotides, CyclicOperonRNA, BacterialSalmonella typhimuriumBacterial ProteinsEndoribonucleasesHydrogen PeroxideNucleotides, Cyclicribonuclease T(2)RNA, Bacterialbiofilmscyclic nucleotidesflagellar motilitymetabolomicsRNA degradationRNA repairtranscriptomics

Identifiers

PMID34662237
PMCPMC8765455
OpenAlexW3207365969

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.