Evidence map›Paper›PMID 34660835›Full record

ArticleOpen forum infectious diseases2021

Development and Dynamics of Cytomegalovirus UL97 Ganciclovir Resistance Mutations in Transplant Recipients Detected by Next-Generation Sequencing.

Isabelle P Lodding, Mette Jørgensen, Marc Bennedbæk, Nikolai Kirkby, Klaudia Naegele, Finn Gustafsson, Michael Perch, Allan Rasmussen, Henrik Sengeløv, Søren S Sørensen and 2 more

Open access · goldAbstract read
In one paragraph

Article in Open forum infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Trial
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Isabelle P LoddingCentre of Excellence for Health, Immunity and Infections (CHIP), Rigshospitalet, Copenhagen, Denmark.
Mette JørgensenCentre of Excellence for Health, Immunity and Infections (CHIP), Rigshospitalet, Copenhagen, Denmark.
Marc BennedbækCentre of Excellence for Health, Immunity and Infections (CHIP), Rigshospitalet, Copenhagen, Denmark.ORCID https://orcid.org/0000-0002-2753-5991
Nikolai KirkbyDepartment of Clinical Microbiology, Rigshospitalet, Copenhagen, Denmark.
Klaudia NaegeleClinical Virology, Laboratory Medicine, University Hospital Basel, Basel, Switzerland.
Finn GustafssonDepartment of Cardiology, Rigshospitalet, Copenhagen, Denmark.ORCID https://orcid.org/0000-0003-2144-341X
Michael PerchDepartment of Cardiology, Section for Lung Transplantation, Rigshospitalet, Copenhagen, Denmark.ORCID https://orcid.org/0000-0001-9740-1246
Allan RasmussenDepartment of Abdominal Surgery, Rigshospitalet, Copenhagen, Denmark.
Henrik SengeløvDepartment of Haematology, Rigshospitalet, Copenhagen, Denmark.
Søren S SørensenDepartment of Clinical Medicine, University of Copenhagen, Copenhagen, Denmark.
Hans H HirschClinical Virology, Laboratory Medicine, University Hospital Basel, Basel, Switzerland.
Jens D LundgrenCentre of Excellence for Health, Immunity and Infections (CHIP), Rigshospitalet, Copenhagen, Denmark.ORCID https://orcid.org/0000-0001-8901-7850
Rigshospitalet · DKUniversity of Copenhagen · DKUniversity of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background(Val)ganciclovir resistance mutations in CMV UL97 (UL97-GCV-R) complicate anti-CMV therapy in recipients of solid organ and hematopoietic stem cell transplants, but comprehensive data on prevalence, emergence, and outcome are scarce.

methodsUsing next-generation sequencing (NGS; Illumina MiSeq platform), we analyzed UL97-GCV-R in patients with available plasma samples and refractory CMV replication/DNAemia (n = 87) containing viral loads ≥910 IU/mL. Twenty-one patients with CMV DNAemia resolving under antiviral therapy were analyzed as controls. Detected mutations were considered induced and of potential clinical significance if they increased by ≥10% compared with the first detected frequency or if they had a maximum frequency ≥25%.

resultsNineteen of 87 (21.8%) with refractory CMV replication had ≥1 UL97-GCV-R detected by NGS, in comparison to 0/21 of the controls (

conclusionsUL97-GCV-R is common among transplant patients with refractory CMV replication. Early testing by NGS allows for identification of major mutations at codons 595, 594, and 603 and excludes a major role of C592G in ganciclovir resistance. Large prospective studies on UL97-GCV-R are warranted.

Indexed as

cytomegalovirusganciclovir resistancehematopoietic stem cell transplantationnext-generation sequencingsolid organ transplantation

Identifiers

PMID34660835
PMCPMC8514173
OpenAlexW2902345530

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.