Evidence map›Paper›PMID 34659134›Full record

ArticleFrontiers in microbiology2021

Machine Learning Predicts the Presence of 2,4,6-Trinitrotoluene in Sediments of a Baltic Sea Munitions Dumpsite Using Microbial Community Compositions.

René Janßen, Aaron J Beck, Johannes Werner, Olaf Dellwig, Johannes Alneberg, Bernd Kreikemeyer, Edmund Maser, Claus Böttcher, Eric P Achterberg, Anders F Andersson and 1 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

René JanßenBiological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany.
Aaron J BeckMarine Biogeochemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Johannes WernerBiological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany.
Olaf DellwigMarine Geology, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany.
Johannes AlnebergScience for Life Laboratory, Department of Gene Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Solna, Sweden.
Bernd KreikemeyerInstitute of Medical Microbiology, Virology and Hygiene, University of Rostock, Rostock, Germany.
Edmund MaserInstitute of Toxicology and Pharmacology for Natural Scientists, University Medical School Schleswig-Holstein, Kiel, Germany.
Claus BöttcherState Ministry of Energy, Agriculture, The Environment, Nature and Digitization, Kiel, Germany.
Eric P AchterbergMarine Biogeochemistry, GEOMAR Helmholtz Centre for Ocean Research Kiel, Kiel, Germany.
Anders F AnderssonScience for Life Laboratory, Department of Gene Technology, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Solna, Sweden.
Matthias LabrenzBiological Oceanography, Leibniz Institute for Baltic Sea Research Warnemünde, Rostock, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacteria are ubiquitous and live in complex microbial communities. Due to differences in physiological properties and niche preferences among community members, microbial communities respond in specific ways to environmental drivers, potentially resulting in distinct microbial fingerprints for a given environmental state. As proof of the principle, our goal was to assess the opportunities and limitations of machine learning to detect microbial fingerprints indicating the presence of the munition compound 2,4,6-trinitrotoluene (TNT) in southwestern Baltic Sea sediments. Over 40 environmental variables including grain size distribution, elemental composition, and concentration of munition compounds (mostly at pmol⋅g

Indexed as

16S rRNA gene amplicon sequencingfingerprintKolberger Heidemercurymonitoringmunition compoundsrandom forestTNT

Identifiers

PMID34659134
PMCPMC8513674

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.