Evidence map›Paper›PMID 34658056›Full record

ArticleGenetic epidemiology2021

REHE: Fast variance components estimation for linear mixed models.

Kun Yue, Jing Ma, Timothy Thornton, Ali Shojaie

Abstract read
In one paragraph

Article in Genetic epidemiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kun YueDepartment of Biostatistics, University of Washington, Seattle, Washington, USA.ORCID 0000-0001-8850-2758
Jing MaPublic Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Timothy ThorntonDepartment of Biostatistics, University of Washington, Seattle, Washington, USA.
Ali ShojaieDepartment of Biostatistics, University of Washington, Seattle, Washington, USA.

Funding

Machine Learning Tools for Discovery and Analysis of Active Metabolic PathwaysR01GM114029 · NIGMS · UNIVERSITY OF WASHINGTON · PI SHOJAIE, ALI · 2016 to 2020
$1.7M
Novel Statistical Inference for Biomedical Big DataR01GM133848 · NIGMS · UNIVERSITY OF WASHINGTON · PI SHOJAIE, ALI · 2020 to 2023
$1.7M
Systems Biology Analysis of Cardiac Electrical Activity and Arrhythmias.R01HL141989 · NHLBI · UNIVERSITY OF WASHINGTON · PI ARKING, DAN E, SHOJAIE, ALI · 2019 to 2020
$968k
Statistical Methods for Network-Based Integrative Analysis of CVD Epigenetic DataK01HL124050 · NHLBI · UNIVERSITY OF WASHINGTON · PI SHOJAIE, ALI · 2016 to 2020
$693k
NHLBI NIH HHS K01 HL124050NHLBI NIH HHS R01 HL141989NIGMS NIH HHS R01 GM114029NIGMS NIH HHS R01 GM133848
6 · The paper itself

Abstract

Linear mixed models are widely used in ecological and biological applications, especially in genetic studies. Reliable estimation of variance components is crucial for using linear mixed models. However, standard methods, such as the restricted maximum likelihood (REML), are computationally inefficient in large samples and may be unstable with small samples. Other commonly used methods, such as the Haseman-Elston (HE) regression, may yield negative estimates of variances. Utilizing regularized estimation strategies, we propose the restricted Haseman-Elston (REHE) regression and REHE with resampling (reREHE) estimators, along with an inference framework for REHE, as fast and robust alternatives that provide nonnegative estimates with comparable accuracy to REML. The merits of REHE are illustrated using real data and benchmark simulation studies.

Indexed as

Models, GeneticComputer SimulationHumansLikelihood FunctionsLinear Modelsgenome-wide association studyheritability studylinear mixed modelrestricted Haseman-Elston regressionvariance component

Identifiers

PMID34658056
PMCPMC8604792

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.