Evidence map›Paper›PMID 34657877›Full record

ArticleCancer biomarkers : section A of Disease markers2022

Aberrant STAT1 methylation as a non-invasive biomarker in blood of HCV induced hepatocellular carcinoma.

Umaira Zakir, Nadir Naveed Siddiqui, Faizan-Ul-Hassan Naqvi, Rizma Khan

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Article in Cancer biomarkers : section A of Disease markers, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

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3 · Its place in the literature

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5 citing papers in PubMed, 1 synthesis or guideline pooled it, 7 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Umaira ZakirDepartment of Biochemistry, University of Karachi, Karachi, Pakistan.
Nadir Naveed SiddiquiThe Karachi Institute of Biotechnology and Genetic Engineering (KIBGE), University of Karachi, Karachi, Pakistan.
Faizan-Ul-Hassan NaqviDepartment of Biochemistry, University of Karachi, Karachi, Pakistan.
Rizma KhanDepartment of Molecular Genetics, Dr. Ziauddin Hospital, Karachi, Pakistan.
University of Karachi · PKZiauddin Hospital · PK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHepatocellular carcinoma (HCC) is one of the most common types of cancer in the world and a reason behind different oncogenes activation and tumor suppressor genes inactivation. Hyper-methylation of tumor suppressor genes including RASSF1a, GSTP1, p16, and APC cause gene silencing as well as tumor cell invasion. STAT 1 gene is a part of signaling cascade of JAK/STAT and any dysregulation in signaling has been implicated in tumor formation.

objectiveThe current investigation focus on the methylation role of STAT1 gene as a non-invasive biomarker in the progression and diagnosis of hepatocellular carcinoma.

methodsSTAT1 gene methylation status in 46 HCV induced hepatocellular carcinoma patients and 40 non-HCC controls were examined by methylation specific PCR. STAT1 gene expression was examined by real time PCR and further validated by various bioinformatics tools.

resultsSTAT1 methylation in HCV-induced HCC (67.4%) was significantly higher compared to the non-HCC controls (p< 0.01). However, mRNA expression of STAT1 gene in methylated groups was significantly lower compared to unmethylated groups (p< 0.05). Furthermore, insilco analysis of STAT1 validated our results and shown expression of STAT1 mRNA was lower in liver cancer with the median 24.3 (p= 0.085).

conclusionAfter using peripheral blood samples we observed that STAT1 silencing caused by aberrant methylation could be used as potential non-invasive biomarker for the diagnosis of HCV induced hepatocellular carcinoma. We conclude that blood as a sample source could be used instead of biopsy for early detection of HCC.

Indexed as

Carcinoma, HepatocellularHepatitis CLiver NeoplasmsBiomarkersDNA MethylationHumansRNA, MessengerSTAT1 Transcription FactorTumor Suppressor ProteinsBiomarkersRNA, MessengerSTAT1 protein, humanSTAT1 Transcription FactorTumor Suppressor Proteinscancer biomarkerCpG IslandHepatocellular carcinomamethylationSTAT1

Identifiers

PMID34657877
PMCPMC12364181
OpenAlexW3205573602

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.