Evidence map›Paper›PMID 34652264›Full record

ArticleEpigenetics2022

Direct bisulphite conversion of cervical samples for DNA methylation analysis.

Lisanne Verhoef, A N Floore, Saskia Doorn, Kate Cuschieri, Ramya Bhatia, A T Hesselink, Chris J L M Meijer, Renske D M Steenbergen, Daniëlle A M Heideman

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Observational
  2. Observational
  3. Review
  4. Article
  5. Article
  6. Review
  7. Validation of ASCL1 and LHX8 Methylation Analysis as Primary Cervical Cancer Screening Strategy in South African Women with Human Immunodeficiency Virus.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2023
    Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Lisanne VerhoefAmsterdam UMC, Vrije Universiteit Amsterdam, Pathology, Cancer Center Amsterdam, De Boelelaan Amsterdam, The Netherlands.ORCID 0000-0001-9877-0297
A N FlooreSelf-screen B.v., Amsterdam, The Netherlands.ORCID 0000-0002-5835-2688
Saskia DoornSelf-screen B.v., Amsterdam, The Netherlands.
Kate CuschieriScottish Human Papilloma Virus Reference Laboratory, Royal Infirmary of Edinburgh, Edinburgh, UK.ORCID 0000-0002-2604-3928
Ramya BhatiaScottish Human Papilloma Virus Reference Laboratory, Royal Infirmary of Edinburgh, Edinburgh, UK.ORCID 0000-0001-5294-0668
A T HesselinkSelf-screen B.v., Amsterdam, The Netherlands.
Chris J L M MeijerAmsterdam UMC, Vrije Universiteit Amsterdam, Pathology, Cancer Center Amsterdam, De Boelelaan Amsterdam, The Netherlands.ORCID 0000-0002-2758-9463
Renske D M SteenbergenAmsterdam UMC, Vrije Universiteit Amsterdam, Pathology, Cancer Center Amsterdam, De Boelelaan Amsterdam, The Netherlands.ORCID 0000-0002-2327-9839
Daniëlle A M HeidemanAmsterdam UMC, Vrije Universiteit Amsterdam, Pathology, Cancer Center Amsterdam, De Boelelaan Amsterdam, The Netherlands.ORCID 0000-0001-6463-7391
Amsterdam University Medical Centers · NLEdinburgh Royal Infirmary · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sodium bisulphite conversion of DNA to separate methylated from unmethylated cytosines is a standard for methylation analysis. This study evaluated a direct cell conversion protocol on cervical samples as alternative to isolated genomic DNA as input.Clinician-collected cervical samples (n = 120) were subjected to a direct conversion protocol, or genomic DNA was isolated with a fixed amount used for subsequent bisulphite conversion. Converted samples were compared for

Indexed as

Papillomavirus InfectionsUterine Cervical NeoplasmsCytokinesDNADNA MethylationFemaleHumansSulfitesCytokinesDNAhydrogen sulfiteSulfitescervical screeninghigh-throughputhost-cell DNA methylationHPV triageliquid-based cytologySodium bisulphite treatment

Identifiers

PMID34652264
PMCPMC9542276
OpenAlexW3207656302

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.