Evidence map›Paper›PMID 34651380›Full record

ArticleProtein science : a publication of the Protein Society2021

Biochemical investigation of an N-acetyltransferase from Helicobacter pullorum.

William A Griffiths, Keelan D Spencer, James B Thoden, Hazel M Holden

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. The footprint of gut microbiota in gallbladder cancer: a mechanistic review.Frontiers in cellular and infection microbiology · 2024
    Review
  2. Article
  3. Article
  4. Biochemical investigation of an N-acetyltransferase from Helicobacter pullorum.Protein science : a publication of the Protein Society · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

William A GriffithsDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA.
Keelan D SpencerDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA.
James B ThodenDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA.
Hazel M HoldenDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin, USA.ORCID 0000-0001-6214-3638
University of Wisconsin–Madison · US

Funding

Biochemical Investigations of Sugar-Modifying EnzymesR35GM134643 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI HOLDEN, HAZEL M. · 2020 to 2024
$2.0M
NIGMS NIH HHS R35 GM134643
6 · The paper itself

Abstract

N-acetylated sugars are often found, for example, on the lipopolysaccharides of Gram-negative bacteria, on the S-layers of Gram-positive bacteria, and on the capsular polysaccharides. Key enzymes involved in their biosynthesis are the sugar N-acetyltransferases. Here, we describe a structural and functional analysis of one such enzyme from Helicobacter pullorum, an emerging pathogen that may be associated with gastroenteritis and gallbladder and liver diseases. For this analysis, the gene BA919-RS02330 putatively encoding an N-acetyltransferase was cloned, and the corresponding protein was expressed and purified. A kinetic analysis demonstrated that the enzyme utilizes dTDP-3-amino-3,6-dideoxy-d-glucose as a substrate as well as dTDP-3-amino-3,6-dideoxy-d-galactose, albeit at a reduced rate. In addition to this kinetic analysis, a similar enzyme from Helicobacter bilis was cloned and expressed, and its kinetic parameters were determined. Seven X-ray crystallographic structures of various complexes of the H. pullorum wild-type enzyme (or the C80T variant) were determined to resolutions of 1.7 Å or higher. The overall molecular architecture of the H. pullorum N-acetyltransferase places it into the Class II left-handed-β-helix superfamily (LβH). Taken together, the data presented herein suggest that 3-acetamido-3,6-dideoxy-d-glucose (or the galactose derivative) is found on either the H. pullorum O-antigen or in another of its complex glycoconjugates. A BLAST search suggests that more than 50 non-pylori Helicobacter spp. have genes encoding N-acetyltransferases. Given that there is little information concerning the complex glycans in non-pylori Helicobacter spp. and considering their zoonotic potential, our results provide new biochemical insight into these pathogens.

Indexed as

AcetyltransferasesBacterial ProteinsBinding SitesCloning, MolecularCrystallography, X-RayDeoxy SugarsEscherichia coliGene ExpressionGenetic VectorsGlycoconjugatesHelicobacterKineticsLipopolysaccharidesModels, MolecularProtein BindingProtein ConformationAcetyltransferasesBacterial ProteinsDeoxy SugarsGlycoconjugatesLipopolysaccharidesRecombinant ProteinsThymine Nucleotides3,6-dideoxyhexoses3-acetamido-3,6-dideoxy-d-glucose3-amino-3,6-dideoxy-d-glucosecarbohydrateenzyme structureHelicobacter bilisHelicobacter pullorumN-acetyltransferasenon-pylori Helicobacter spp.X-ray crystallography

Identifiers

PMID34651380
PMCPMC8605375
OpenAlexW3207375744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.