Evidence map›Paper›PMID 34645830›Full record

ArticleNature communications2021

Coupled protein synthesis and ribosome-guided piRNA processing on mRNAs.

Yu H Sun, Ruoqiao Huiyi Wang, Khai Du, Jiang Zhu, Jihong Zheng, Li Huitong Xie, Amanda A Pereira, Chao Zhang, Emiliano P Ricci, Xin Zhiguo Li

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. The pachytene-specific lncRNANon-coding RNA research · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Enigmatic Pachytene PIWI-Interacting RNAs.Genome biology and evolution · 2024
    Review
  10. Review
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. The birth of piRNAs: how mammalian piRNAs are produced, originated, and evolved.Mammalian genome : official journal of the International Mammalian Genome Society · 2022
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yu H SunCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0003-0333-2898
Ruoqiao Huiyi WangCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Khai DuCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Jiang ZhuCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.ORCID http://orcid.org/0000-0002-0458-1354
Jihong ZhengSchool of Life Sciences and Technology, Tongji University, Shanghai, 200092, China.
Li Huitong XieCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Amanda A PereiraCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA.
Chao ZhangSchool of Life Sciences and Technology, Tongji University, Shanghai, 200092, China.ORCID http://orcid.org/0000-0001-6418-8370
Emiliano P RicciUniversité de Lyon, ENSL, UCBL, INSERM, CNRS, LBMC, 46 Allée d'Italie, Lyon, 69007, France.
Xin Zhiguo LiCenter for RNA Biology: From Genome to Therapeutics, Department of Biochemistry and Biophysics, University of Rochester Medical Center, Rochester, NY, 14642, USA. Xin_Li@urmc.rochester.edu.ORCID http://orcid.org/0000-0001-6803-4600

Funding

Define piRNA biogenesis and function in miceR35GM128782 · NIGMS · UNIVERSITY OF ROCHESTER · PI LI, XIN · 2018 to 2022
$2.0M
NIGMS NIH HHS R35 GM128782
6 · The paper itself

Abstract

PIWI-interacting small RNAs (piRNAs) protect the germline genome and are essential for fertility. piRNAs originate from transposable element (TE) RNAs, long non-coding RNAs, or 3´ untranslated regions (3´UTRs) of protein-coding messenger genes, with the last being the least characterized of the three piRNA classes. Here, we demonstrate that the precursors of 3´UTR piRNAs are full-length mRNAs and that post-termination 80S ribosomes guide piRNA production on 3´UTRs in mice and chickens. At the pachytene stage, when other co-translational RNA surveillance pathways are sequestered, piRNA biogenesis degrades mRNAs right after pioneer rounds of translation and fine-tunes protein production from mRNAs. Although 3´UTR piRNA precursor mRNAs code for distinct proteins in mice and chickens, they all harbor embedded TEs and produce piRNAs that cleave TEs. Altogether, we discover a function of the piRNA pathway in fine-tuning protein production and reveal a conserved piRNA biogenesis mechanism that recognizes translating RNAs in amniotes.

Indexed as

3' Untranslated RegionsProtein BiosynthesisAnimalsBase SequenceChickensDNA Transposable ElementsFertilityGene Expression RegulationMaleMiceMice, Inbred C57BLMice, TransgenicPachytene StageRibosomesRNA, Small InterferingSpermatogenesis3' Untranslated RegionsDNA Transposable ElementsRNA, Small Interfering

Identifiers

PMID34645830
PMCPMC8514520

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.