Evidence map›Paper›PMID 34645814›Full record

ArticleNature communications2021

Structural basis of the P4B ATPase lipid flippase activity.

Lin Bai, Bhawik K Jain, Qinglong You, H Diessel Duan, Mehmet Takar, Todd R Graham, Huilin Li

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. The danger of flipping an outside lipid to the inside.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Functional Analysis of the P-Type ATPases Apt2-4 fromJournal of fungi (Basel, Switzerland) · 2023
    Article
  18. Article
  19. Lipid Transport byInfection and immunity · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Lin Bai *Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University, Beijing, China. lbai@bjmu.edu.cn.
Bhawik K Jain *Department of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-1362-6139
Qinglong You *Department of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.ORCID 0000-0002-5160-6198
H Diessel DuanDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA.ORCID 0000-0001-5069-0191
Mehmet TakarDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-7350-2349
Todd R GrahamDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA. tr.graham@vanderbilt.edu.ORCID 0000-0002-3256-2126
Huilin LiDepartment of Structural Biology, Van Andel Institute, Grand Rapids, MI, USA. Huilin.Li@vai.org.ORCID 0000-0001-8085-8928
Van Andel Institute · USVanderbilt University · USPeking University · CN

Funding

The structure and function of eukaryotic protein glycosylation enzymesR01CA231466 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI Huilin Li · 2018 to 2026
$4.0M
P4-ATPase mechanism of phospholipid translocationR01GM107978 · NIGMS · VANDERBILT UNIVERSITY · PI GRAHAM, TODD R · 2013 to 2021
$2.5M
NCI NIH HHS R01 CA231466NIGMS NIH HHS R01 GM107978
6 · The paper itself

Abstract

P4 ATPases are lipid flippases that are phylogenetically grouped into P4A, P4B and P4C clades. The P4A ATPases are heterodimers composed of a catalytic α-subunit and accessory β-subunit, and the structures of several heterodimeric flippases have been reported. The S. cerevisiae Neo1 and its orthologs represent the P4B ATPases, which function as monomeric flippases without a β-subunit. It has been unclear whether monomeric flippases retain the architecture and transport mechanism of the dimeric flippases. Here we report the structure of a P4B ATPase, Neo1, in its E1-ATP, E2P-transition, and E2P states. The structure reveals a conserved architecture as well as highly similar functional intermediate states relative to dimeric flippases. Consistently, structure-guided mutagenesis of residues in the proposed substrate translocation path disrupted Neo1's ability to establish membrane asymmetry. These observations indicate that evolutionarily distant P4 ATPases use a structurally conserved mechanism for substrate transport.

Indexed as

Adenosine TriphosphatasesAmino Acid SequenceBinding SitesCell MembraneCloning, MolecularCryoelectron MicroscopyGene ExpressionGenetic VectorsHumansHydrophobic and Hydrophilic InteractionsIsoenzymesLysophospholipidsMembrane Transport ProteinsModels, MolecularPhosphatidylethanolaminesPhosphatidylserinesAdenosine TriphosphatasesATP9A protein, humanIsoenzymeslysophosphatidylserineLysophospholipidsMembrane Transport ProteinsNEO1 protein, S cerevisiaephosphatidylethanolaminePhosphatidylethanolaminesPhosphatidylserinesPhospholipid Transfer ProteinsRecombinant ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID34645814
PMCPMC8514546
OpenAlexW3205203134

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.