Evidence map›Paper›PMID 34645809›Full record

ArticleNature communications2021

Direct on-swab metabolic profiling of vaginal microbiome host interactions during pregnancy and preterm birth.

Pamela Pruski, Gonçalo D S Correia, Holly V Lewis, Katia Capuccini, Paolo Inglese, Denise Chan, Richard G Brown, Lindsay Kindinger, Yun S Lee, Ann Smith and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
13.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 79 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 11 institutions in 1 country.

Pamela Pruski *Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK.
Gonçalo D S Correia *Division of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK.
Holly V LewisMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.
Katia CapucciniMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.
Paolo IngleseDivision of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK.ORCID http://orcid.org/0000-0001-6179-9643
Denise ChanMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.
Richard G BrownImperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Lindsay KindingerImperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London, London, UK.
Yun S LeeMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.
Ann SmithFaculty of Health and Applied Sciences, University West of England, Bristol, UK.ORCID http://orcid.org/0000-0002-4355-229X
Julian MarchesiDivision of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK.
Julie A K McDonaldMRC Centre for Molecular Bacteriology and Infection, Imperial College London, London, UK.ORCID http://orcid.org/0000-0003-0739-6047
Simon CameronDivision of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK.ORCID http://orcid.org/0000-0001-9570-135X
Kate Alexander-HardimanDivision of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK.
Anna L DavidElizabeth Garrett Anderson Institute for Women's Health, University College London, London, UK.
Sarah J StockMRC Centre for Reproductive Health, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0003-4308-856X
Jane E NormanMRC Centre for Reproductive Health, University of Edinburgh, Edinburgh, UK.
Vasso TerzidouMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-7579-4947
T G TeohSt Mary's Hospital, Imperial College Healthcare NHS Trust, London, UK.
Lynne SykesMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-7806-5707
Phillip R BennettMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK.ORCID http://orcid.org/0000-0002-6253-4919
Zoltan TakatsDivision of Systems Medicine, Department of Metabolism, Digestion and Reproduction, Faculty of Medicine Imperial College London, London, UK. z.takats@imperial.ac.uk.ORCID http://orcid.org/0000-0002-0795-3467
David A MacIntyreMarch of Dimes Prematurity Research Centre at Imperial College London, London, UK. d.macintyre@imperial.ac.uk.ORCID http://orcid.org/0000-0002-4186-5567
Imperial College London · GBQueen Charlotte's and Chelsea Hospital · GBNIHR Imperial Biomedical Research Centre · GBUniversity College Hospital · GBChelsea and Westminster Hospital NHS Foundation Trust · GBImperial College Healthcare NHS Trust · GBMiscarriage Association · GBMRC Centre for Reproductive Health · GBQueen's University Belfast · GBUniversity of Bristol · GBUniversity of the West of England · GB

Funding

Medical Research Council MR/L009226/1Wellcome Trust 209560/Z/17/Z
6 · The paper itself

Abstract

The pregnancy vaginal microbiome contributes to risk of preterm birth, the primary cause of death in children under 5 years of age. Here we describe direct on-swab metabolic profiling by Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) for sample preparation-free characterisation of the cervicovaginal metabolome in two independent pregnancy cohorts (VMET, n = 160; 455 swabs; VMET II, n = 205; 573 swabs). By integrating metataxonomics and immune profiling data from matched samples, we show that specific metabolome signatures can be used to robustly predict simultaneously both the composition of the vaginal microbiome and host inflammatory status. In these patients, vaginal microbiota instability and innate immune activation, as predicted using DESI-MS, associated with preterm birth, including in women receiving cervical cerclage for preterm birth prevention. These findings highlight direct on-swab metabolic profiling by DESI-MS as an innovative approach for preterm birth risk stratification through rapid assessment of vaginal microbiota-host dynamics.

Indexed as

Immunity, InnateAdultCerclage, CervicalCervix UteriFemaleHumansInfant, NewbornInfant, PrematureMetabolomeMicrobiotaPregnancyPremature BirthProspective StudiesSpectrometry, Mass, Electrospray IonizationVagina

Identifiers

PMID34645809
PMCPMC8514602
OpenAlexW3207227430

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.