Evidence map›Paper›PMID 34645426›Full record

ArticleBMC veterinary research2021

Presence of DNA from Chlamydia-like organisms in the nasal cavities of grey seal pups (Halichoerus grypus) and three different substrates present in a breeding colony.

Mark P Dagleish, Allen F Flockhart, Johanna L Baily, Ailsa J Hall, T Ian Simpson, David Longbottom

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Mark P DagleishMoredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
Allen F FlockhartMoredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
Johanna L BailyMoredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK.
Ailsa J HallSea Mammal Research Unit, Scottish Oceans Institute, University of St Andrews, St Andrews, UK.
T Ian SimpsonBiomathematics and Statistics Scotland, JCMB, The King's Buildings, Peter Guthrie Tait Road, Edinburgh, UK.
David LongbottomMoredun Research Institute, Pentlands Science Park, Bush Loan, Penicuik, UK. david.longbottom@moredun.ac.uk.ORCID http://orcid.org/0000-0003-0086-8443
Moredun Research Institute · GBBiomathematics and Statistics Scotland · GBEdinburgh Napier University · GBUniversity of St Andrews · GBUniversity of Stirling · GB

Funding

Biotechnology and Biological Sciences Research Council BB/J015083/1
6 · The paper itself

Abstract

backgroundChlamydia-like organisms (CLO) have been found to be present in many environmental niches, including human sewage and agricultural run-off, as well as in a number of aquatic species worldwide. Therefore, monitoring their presence in sentinel wildlife species may be useful in assessing the wider health of marine food webs in response to habitat loss, pollution and disease. We used nasal swabs from live (n = 42) and dead (n = 50) pre-weaned grey seal pups and samples of differing natal substrates (n = 8) from an off-shore island devoid of livestock and permanent human habitation to determine if CLO DNA is present in these mammals and to identify possible sources.

resultsWe recovered CLO DNA from 32/92 (34.7%) nasal swabs from both live (n = 17) and dead (n = 15) seal pups that clustered most closely with currently recognised species belonging to three chlamydial families: Parachlamydiaceae (n = 22), Rhabdochlamydiaceae (n = 6), and Simkaniaceae (n = 3). All DNA positive sediment samples (n = 7) clustered with the Rhabdochlamydiaceae. No difference was found in rates of recovery of CLO DNA in live versus dead pups suggesting the organisms are commensal but their potential as opportunistic secondary pathogens could not be determined.

conclusionThis is the first report of CLO DNA being found in marine mammals. This identification warrants further investigation in other seal populations around the coast of the UK and in other areas of the world to determine if this finding is unique or more common than shown by this data. Further investigation would also be warranted to determine if they are present as purely commensal organisms or whether they could also be opportunistic pathogens in seals, as well as to investigate possible sources of origin, including whether they originated as a result of anthropogenic impacts, including human waste and agricultural run-off.

Indexed as

Environmental MicrobiologyAnimalsChlamydiaceaeDNA, BacterialHumansNasal CavityPhylogenyScotlandSeals, EarlessWaste ProductsDNA, BacterialWaste ProductsChlamydia-like organismscoastal reservoirParachlamydiaceaeRhabdochlamydiaceaesentinel speciesSimkaniaceae

Identifiers

PMID34645426
PMCPMC8515689
OpenAlexW3207631746

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.