Evidence map›Paper›PMID 34644530›Full record

ArticleCell2021

Cyclic CMP and cyclic UMP mediate bacterial immunity against phages.

Nitzan Tal, Benjamin R Morehouse, Adi Millman, Avigail Stokar-Avihail, Carmel Avraham, Taya Fedorenko, Erez Yirmiya, Ehud Herbst, Alexander Brandis, Tevie Mehlman and 6 more

Open access · greenAbstract read
In one paragraph

Article in Cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
30.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 272 citations in OpenAlex.

  1. How bacterial immune systems sense phage infection.Nature reviews. Microbiology · 2026
    Review
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  9. Characterization of defensome genes and mobile genetic Elements in different types of pasture soil agroecosystems from the Brazilian Amazon.International microbiology : the official journal of the Spanish Society for Microbiology · 2026
    Article
  10. Article
  11. TIR-like NADases act in bacterial immunity and the RNA vault.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
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91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Nitzan TalDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Benjamin R MorehouseDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Adi MillmanDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Avigail Stokar-AvihailDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Carmel AvrahamDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Taya FedorenkoDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Erez YirmiyaDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Ehud HerbstDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Alexander BrandisLife Sciences Core Facilities, Weizmann Institute of Science, Rehovot 7670001, Israel.
Tevie MehlmanLife Sciences Core Facilities, Weizmann Institute of Science, Rehovot 7670001, Israel.
Yaara Oppenheimer-ShaananDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Alexander F A KeszeiDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.
Sichen ShaoDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA.
Gil AmitaiDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel.
Philip J KranzuschDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Parker Institute for Cancer Immunotherapy at Dana-Farber Cancer Institute, Boston, MA 02115, USA. Electronic address: philip_kranzusch@dfci.harvard.edu.
Rotem SorekDepartment of Molecular Genetics, Weizmann Institute of Science, Rehovot 7610001, Israel. Electronic address: rotem.sorek@weizmann.ac.il.
Weizmann Institute of Science · ILDana-Farber Cancer Institute · USHarvard University · US

Funding

Mechanism of activation of a new cGAS-like enzyme in humansF32GM133063 · NIGMS · DANA-FARBER CANCER INST · PI MOREHOUSE, BENJAMIN ROBERT · 2019 to 2020
$127k
NIGMS NIH HHS F32 GM133063
6 · The paper itself

Abstract

The cyclic pyrimidines 3',5'-cyclic cytidine monophosphate (cCMP) and 3',5'-cyclic uridine monophosphate (cUMP) have been reported in multiple organisms and cell types. As opposed to the cyclic nucleotides 3',5'-cyclic adenosine monophosphate (cAMP) and 3',5'-cyclic guanosine monophosphate (cGMP), which are second messenger molecules with well-established regulatory roles across all domains of life, the biological role of cyclic pyrimidines has remained unclear. Here we report that cCMP and cUMP are second messengers functioning in bacterial immunity against viruses. We discovered a family of bacterial pyrimidine cyclase enzymes that specifically synthesize cCMP and cUMP following phage infection and demonstrate that these molecules activate immune effectors that execute an antiviral response. A crystal structure of a uridylate cyclase enzyme from this family explains the molecular mechanism of selectivity for pyrimidines as cyclization substrates. Defense systems encoding pyrimidine cyclases, denoted here Pycsar (pyrimidine cyclase system for antiphage resistance), are widespread in prokaryotes. Our results assign clear biological function to cCMP and cUMP as immunity signaling molecules in bacteria.

Indexed as

Amino Acid SequenceBacteriaBacteriophagesBurkholderiaCyclic CMPCyclizationEscherichia coliModels, MolecularMutationNucleotides, CyclicPhosphorus-Oxygen LyasesPyrimidinesUridine Monophosphatecyclic 3',5'-uridine monophosphateCyclic CMPcytidylate cyclaseNucleotides, CyclicPhosphorus-Oxygen LyasesPyrimidinesUridine Monophosphateanti-phagebacteriacCMPcUMPcyclasedefensepb8phagePycsarpyrimidine

Identifiers

PMID34644530
PMCPMC9070634
OpenAlexW3206452667

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.