Evidence map›Paper›PMID 34644120›Full record

ArticleScience advances2021

Ancestral circuits for vertebrate color vision emerge at the first retinal synapse.

Takeshi Yoshimatsu, Philipp Bartel, Cornelius Schröder, Filip K Janiak, François St-Pierre, Philipp Berens, Tom Baden

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Descattering and image restoration with a transformer-based neural network in deep tissue imaging.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. On analogies in vertebrate and insect visual systems.Nature reviews. Neuroscience · 2025
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
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  12. Article
  13. Ancient origin of the rod bipolar cell pathway in the vertebrate retina.bioRxiv : the preprint server for biology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Opponent processing in the retinal mosaic of nymphalid butterflies.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Takeshi YoshimatsuSchool of Life Sciences, University of Sussex, Brighton, UK.ORCID 0000-0002-4939-2020
Philipp BartelSchool of Life Sciences, University of Sussex, Brighton, UK.
Cornelius SchröderInstitute of Ophthalmic Research, University of Tübingen, Tübingen, Germany.ORCID 0000-0001-5643-2097
Filip K JaniakSchool of Life Sciences, University of Sussex, Brighton, UK.ORCID 0000-0002-9295-2740
François St-PierreDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-8618-4135
Philipp BerensInstitute of Ophthalmic Research, University of Tübingen, Tübingen, Germany.ORCID 0000-0002-0199-4727
Tom BadenSchool of Life Sciences, University of Sussex, Brighton, UK.ORCID 0000-0003-2808-4210
University of Sussex · GBBernstein Center for Computational Neuroscience Tübingen · DEBaylor College of Medicine · US

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7M
Molecular Engineering of Natural Light-Gated Chloride Channels for Optogenetic InhibitionU01NS118288 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI SPUDICH, JOHN LEE, ST-PIERRE, FRANCOIS · 2020 to 2023
$5.2M
Designing and deploying an expanded color palette of voltage indicators engineered for multiphoton microscopyU01NS113294 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI ST-PIERRE, FRANCOIS, TOLIAS, ANDREAS · 2019 to 2021
$3.7M
Engineering designer probes for imaging membrane potential: novel parts, architectures, and platformsR01EB027145 · NIBIB · BAYLOR COLLEGE OF MEDICINE · PI ST-PIERRE, FRANCOIS · 2019 to 2022
$2.2M
NIBIB NIH HHS R01 EB027145NIMH NIH HHS U19 MH114830NINDS NIH HHS U01 NS113294NINDS NIH HHS U01 NS118288
6 · The paper itself

Abstract

For color vision, retinal circuits separate information about intensity and wavelength. In vertebrates that use the full complement of four “ancestral” cone types, the nature and implementation of this computation remain poorly understood. Here, we establish the complete circuit architecture of outer retinal circuits underlying color processing in larval zebrafish. We find that the synaptic outputs of red and green cones efficiently rotate the encoding of natural daylight in a principal components analysis–like manner to yield primary achromatic and spectrally opponent axes, respectively. Blue cones are tuned to capture most remaining variance when opposed to green cones, while UV cone present a UV achromatic axis for prey capture. We note that fruitflies use essentially the same strategy. Therefore, rotating color space into primary achromatic and chromatic axes at the eye’s first synapse may thus be a fundamental principle of color vision when using more than two spectrally well-separated photoreceptor types.

Identifiers

PMID34644120
PMCPMC8514090
OpenAlexW3205984002

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.