Evidence map›Paper›PMID 34642702›Full record

ArticlemedRxiv : the preprint server for health sciences2021

A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program.

Anurag Verma, Noah Tsao, Lauren Thomann, Yuk-Lam Ho, Sudha Iyengar, Shiuh-Wen Luoh, Rotonya Carr, Dana Crawford, Jimmy T Efird, Jennifer Huffman and 27 more

Open access · greenAbstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

37 authors at 16 institutions in 1 country.

Anurag VermaCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Noah TsaoCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Lauren ThomannVA Boston Healthcare System, Boston, Massachusetts, USA.
Yuk-Lam HoMassachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, Massachusetts, USA.
Sudha IyengarLouis Stokes Cleveland VA Medical Center, Cleveland, OH, USA.
Shiuh-Wen LuohVA Portland Health Care System, Portland OR, USA.
Rotonya CarrCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Dana CrawfordCleveland Institute for Computational Biology, Department of Population and Quantitative Health Sciences, Case Western Reserve University, Cleveland, Ohio, USA.
Jimmy T EfirdCardiovascular Medicine Division, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts, USA.
Jennifer HuffmanVA Boston Healthcare System, Boston, Massachusetts, USA.
Adriana HungDivision of Hematology and Medical Oncology, Knight Cancer Institute, Oregon Health and Science University, Portland, Oregon, USA.
Kerry IveyDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Michael LevinVA Portland Health Care System, Portland OR, USA.
Julie LynchVA Informatics and Computing Infrastructure, VA Salt Lake City Health Care System, Salt Lake City, Utah, USA.
Pradeep NatarajanVA Boston Healthcare System, Boston, Massachusetts, USA.
Saiju PyarajanVA Boston Healthcare System, Boston, Massachusetts, USA.
Alexander BickVA Boston Healthcare System, Boston, Massachusetts, USA.
Lauren CostaMassachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, Massachusetts, USA.
Giulio GenoveseProgram in Medical and Population Genetics and the Cardiovascular Disease Initiative, Broad Institute of Harvard & MIT, Cambridge, Massachusetts, USA.
Richard HaugerDepartment of Psychiatry, University of California, San Diego, La Jolla, CA; Center of Excellence for Stress and Mental Health, VA San Diego Healthcare System, San Diego, CA, USA.
Ravi MadduriUniversity of Chicago Consortium for Advanced Science and Engineering, The University of Chicago, Chicago, Illinois, USA.
Gita PathakVA Connecticut Healthcare System, West Haven, CT, USA.
Renato PolimantiVA Connecticut Healthcare System, West Haven, CT, USA.
Benjamin VoightCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Marijana VujkovicCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Maryam ZekavatVA Boston Healthcare System, Boston, Massachusetts, USA.
Hongyu ZhaoVA Connecticut Healthcare System, West Haven, CT, USA.
Marylyn D RitchieVA Portland Health Care System, Portland OR, USA.
VA Million Veteran Program COVID-19 Science Initiative
Kyong-Mi ChangCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Kelly ChoMassachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, Massachusetts, USA.
Juan P CasasMassachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, Massachusetts, USA.
Philip S TsaoVA Palo Alto Health Care System, Palo Alto, California, USA.
J Michael GazianoMassachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, Massachusetts, USA.
Christopher O'DonnellVA Boston Healthcare System, Boston, Massachusetts, USA.
Scott DamrauerCorporal Michael Crescenz VA Medical Center, Philadelphia, Philadelphia, USA.
Katherine LiaoVA Boston Healthcare System, Boston, Massachusetts, USA.
Brigham and Women's Hospital · USVA Boston Healthcare System · USPhiladelphia VA Medical Center · USBroad Institute · USOregon Health & Science University · USYale University · USVanderbilt University · USArgonne National Laboratory · USCase Western Reserve University · USHarvard University · USLouis Stokes Cleveland VA Medical Center · USTranslational Therapeutics (United States) · USUniversity of California San Diego · USUniversity of Washington · USVA Portland Health Care System · USVA Salt Lake City Healthcare System · US

Funding

VERITY: Value and Evidence in Rheumatology using bioInformaTics, and advanced analYticsP30AR072577 · NIAMS · BRIGHAM AND WOMEN'S HOSPITAL · PI Daniel Hal Solomon · 2017 to 2026
$9.8M
Molecular Mechanisms Of Post-Transplant Recurrent Alcoholic Liver DiseaseR01AA026302 · NIAAA · UNIVERSITY OF WASHINGTON · PI ROTONYA M CARR · 2017 to 2026
$3.2M
CSRD VA I01 CX001727Medical Research Council MC_PC_20058NIAAA NIH HHS R01 AA026302NIAMS NIH HHS P30 AR072577
6 · The paper itself

Abstract

The study aims to determine the shared genetic architecture between COVID-19 severity with existing medical conditions using electronic health record (EHR) data. We conducted a Phenome-Wide Association Study (PheWAS) of genetic variants associated with critical illness (n=35) or hospitalization (n=42) due to severe COVID-19 using genome-wide association summary from the Host Genetics Initiative. PheWAS analysis was performed using genotype-phenotype data from the Veterans Affairs Million Veteran Program (MVP). Phenotypes were defined by International Classification of Diseases (ICD) codes mapped to clinically relevant groups using published PheWAS methods. Among 658,582 Veterans, variants associated with severe COVID-19 were tested for association across 1,559 phenotypes. Variants at the

Identifiers

PMID34642702
PMCPMC8509103
OpenAlexW3164689648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.