Evidence map›Paper›PMID 34641525›Full record

ArticleMolecules (Basel, Switzerland)2021

Unambiguous Stereochemical Assignment of Cyclo(Phe-Pro), Cyclo(Leu-Pro), and Cyclo(Val-Pro) by Electronic Circular Dichroic Spectroscopy.

Alison Domzalski, Liliana Margent, Valeria Vigo, Faizunnahar Dewan, Naga Vara Kishore Pilarsetty, Yujia Xu, Akira Kawamura

Abstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Alison DomzalskiBiochemistry Ph.D. Program, The Graduate Center of CUNY, New York, NY 10016, USA.ORCID 0000-0001-9778-5008
Liliana MargentDepartment of Chemistry, Hunter College of CUNY, New York, NY 10065, USA.
Valeria VigoDepartment of Chemistry, Hunter College of CUNY, New York, NY 10065, USA.
Faizunnahar DewanBiochemistry Ph.D. Program, The Graduate Center of CUNY, New York, NY 10016, USA.
Naga Vara Kishore PilarsettyDepartment of Radiology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Yujia XuBiochemistry Ph.D. Program, The Graduate Center of CUNY, New York, NY 10016, USA.
Akira KawamuraBiochemistry Ph.D. Program, The Graduate Center of CUNY, New York, NY 10016, USA.ORCID 0000-0002-1662-1093

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Undergraduate Biomedical Research Training at HunterT34GM007823 · NIGMS · HUNTER COLLEGE · PI FORD, JENNIFER S · 1985 to 2020
$8.2M
National Science Foundation CHE MRI 1900509NCI NIH HHS P30 CA008748NIGMS NIH HHS T34GM007823PSC CUNY TRADA-50-661
6 · The paper itself

Abstract

2,5-diketopiperazines (DKPs) are cyclic dipeptides ubiquitously found in nature. In particular, cyclo(Phe-Pro), cyclo(Leu-Pro), and cyclo(Val-Pro) are frequently detected in many microbial cultures. Each of these DKPs has four possible stereoisomers due to the presence of two chirality centers. However, absolute configurations of natural DKPs are often ambiguous due to the lack of a simple, sensitive, and reproducible method for stereochemical assignment. This is an important problem because stereochemistry is a key determinant of biological activity. Here, we report a synthetic DKP library containing all stereoisomers of cyclo(Phe-Pro), cyclo(Leu-Pro), and cyclo(Val-Pro). The library was subjected to spectroscopic characterization using mass spectrometry, NMR, and electronic circular dichroism (ECD). It turned out that ECD can clearly differentiate DKP stereoisomers. Thus, our ECD dataset can serve as a reference for unambiguous stereochemical assignment of cyclo(Phe-Pro), cyclo(Leu-Pro), and cyclo(Val-Pro) samples from natural sources. The DKP library was also subjected to a biological screening using assays for

Indexed as

Circular DichroismDiketopiperazinesDipeptidesEscherichia coliPeptides, CyclicStereoisomerismStructure-Activity Relationshipcyclo(leucyl-prolyl)cyclo(phenylalanyl-prolyl)DiketopiperazinesDipeptidesPeptides, Cyclicbiofilmsdiketopiperazineselectronic circular dichroismepimerizationmixed microbial culturestereochemistry

Identifiers

PMID34641525
PMCPMC8512403

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.