Evidence map›Paper›PMID 34641449›Full record

ArticleMolecules (Basel, Switzerland)2021

Structural Insights into Novel 15-Prostaglandin Dehydrogenase Inhibitors.

Prema L Mallipeddi, Yongyou Zhang, Hongyun Li, Sanford D Markowitz, Bruce Posner

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Prema L MallipeddiDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yongyou ZhangDepartment of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Hongyun LiDepartment of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Sanford D MarkowitzDepartment of Medicine, Case Western Reserve University, Cleveland, OH 44106, USA.
Bruce PosnerDepartment of Biochemistry, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Case Western Reserve University · USThe University of Texas Southwestern Medical Center · US

Funding

NCI NIH HHS 5P30 CA124543-09
6 · The paper itself

Abstract

We discovered SW033291 in a high throughput chemical screen aimed at identifying 15-prostaglandin dehydrogenase (15-PGDH) modulators. The compound exhibited inhibitory activity in in vitro biochemical and cell-based assays of 15-PGDH activity. We subsequently demonstrated that this compound, and several analogs thereof, are effective in in vivo mouse models of bone marrow transplant, colitis, and liver regeneration, where increased levels of PGE2 positively potentiate tissue regeneration. To better understand the binding of SW033291, we carried out docking studies for both the substrate, PGE2, and an inhibitor, SW033291, to 15-PGDH. Our models suggest similarities in the ways that PGE2 and SW033291 interact with key residues in the 15-PGDH-NAD+ complex. We carried out molecular dynamics simulations (MD) of SW033291 bound to this complex, in order to understand the dynamics of the binding interactions for this compound. The butyl side chain (including the sulfoxide) of SW033291 participates in crucial binding interactions that are similar to those observed for the C15-OH and the C16-C20 alkyl chain of PGE2. In addition, interactions with residues Ser138, Tyr151, and Gln148 play key roles in orienting and stabilizing SW033291 in the binding site and lead to enantioselectivity for the

Indexed as

Binding SitesHumansHydroxyprostaglandin DehydrogenasesMolecular Dynamics SimulationPyridinesThiophenes15-hydroxyprostaglandin dehydrogenaseHydroxyprostaglandin DehydrogenasesPyridinesSW033291Thiophenes15-PGDHinhibitormolecular dockingPGE2

Identifiers

PMID34641449
PMCPMC8512612
OpenAlexW3203621568

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.