Evidence map›Paper›PMID 34638622›Full record

ArticleInternational journal of molecular sciences2021

Structure-Based Understanding of ABCA3 Variants.

Marion Onnée, Pascale Fanen, Isabelle Callebaut, Alix de Becdelièvre

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Biomedicines · 2024
    Review
  3. Article
  4. Article
  5. Quantifying Functional Impairment ofInternational journal of molecular sciences · 2023
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Marion OnnéeInstitut Mondor de Recherche Biomédicale, Université Paris Est Creteil, F-94010 Créteil, France.
Pascale FanenInstitut Mondor de Recherche Biomédicale, Université Paris Est Creteil, F-94010 Créteil, France.
Isabelle CallebautInstitut de Minéralogie de Physique des Matériaux et de Cosmochimie (IMPMC), Muséum National d'Histoire Naturelle, UMR CNRS 7590, Sorbonne Université, F-75005 Paris, France.
Alix de BecdelièvreInstitut Mondor de Recherche Biomédicale, Université Paris Est Creteil, F-94010 Créteil, France.
Institut Mondor de Recherche Biomédicale · FRSorbonne Université · FRUniversité Paris-Est Créteil · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ABCA3 is a crucial protein of pulmonary surfactant biosynthesis, associated with recessive pulmonary disorders such as neonatal respiratory distress and interstitial lung disease. Mutations are mostly private, and accurate interpretation of variants is mandatory for genetic counseling and patient care. We used 3D structure information to complete the set of available bioinformatics tools dedicated to medical decision. Using the experimental structure of human ABCA4, we modeled at atomic resolution the human ABCA3 3D structure including transmembrane domains (TMDs), nucleotide-binding domains (NBDs), and regulatory domains (RDs) in an ATP-bound conformation. We focused and mapped known pathogenic missense variants on this model. We pinpointed amino-acids within the NBDs, the RDs and within the interfaces between the NBDs and TMDs intracellular helices (IHs), which are predicted to play key roles in the structure and/or the function of the ABCA3 transporter. This theoretical study also highlighted the possible impact of ABCA3 variants in the cytosolic part of the protein, such as the well-known p.Glu292Val and p.Arg288Lys variants.

Indexed as

Genetic VariationAdenosine TriphosphateAmino Acid SequenceATP-Binding Cassette TransportersBinding SitesComputational BiologyHumansLung Diseases, InterstitialModels, MolecularMutationMutation, MissenseProtein ConformationProtein DomainsPulmonary SurfactantsRespiratory Distress Syndrome, NewbornSequence Homology, Amino AcidABCA3 protein, humanAdenosine TriphosphateATP-Binding Cassette TransportersPulmonary Surfactants3D modelingABCA3mutationnucleotide-binding domain (NBD)regulatory domain (RD)

Identifiers

PMID34638622
PMCPMC8508924
OpenAlexW3201786598

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.