Evidence map›Paper›PMID 34638535›Full record

ArticleInternational journal of molecular sciences2021

Transcriptomic Analysis Reveals Differential Expression of Genes between Lung Capillary and Post Capillary Venules in Abdominal Sepsis.

Milladur Rahman, Zhiyi Ding, Carl-Fredrik Rönnow, Henrik Thorlacius

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Milladur RahmanDepartment of Clinical Sciences, Malmö, Section for Surgery, Lund University, 214 28 Malmö, Sweden.ORCID 0000-0002-8883-4848
Zhiyi DingDepartment of Clinical Sciences, Malmö, Section for Surgery, Lund University, 214 28 Malmö, Sweden.
Carl-Fredrik RönnowDepartment of Clinical Sciences, Malmö, Section for Surgery, Lund University, 214 28 Malmö, Sweden.ORCID 0000-0001-5848-1407
Henrik ThorlaciusDepartment of Clinical Sciences, Malmö, Section for Surgery, Lund University, 214 28 Malmö, Sweden.
Lund University · SE

Funding

Einar och Inga Nilssons Stiftelse för Kirurgiforskning och Forskning inom Jordbruket N/AMaggie Stephens foundation N/AVetenskapsrådet 2017-01621
6 · The paper itself

Abstract

Lung endothelial cell dysfunction plays a central role in septic-induced lung injury. We hypothesized that endothelial cell subsets, capillary endothelial cells (capEC) and post capillary venules (PCV), might play different roles in regulating important pathophysiology in sepsis. In order to reveal global transcriptomic changes in endothelial cell subsets during sepsis, we induced sepsis in C57BL/6 mice by cecal ligation and puncture (CLP). We confirmed that CLP induced systemic and lung inflammation in our model. Endothelial cells (ECs) from lung capillary and PCV were isolated by cell sorting and transcriptomic changes were analyzed by bioinformatic tools. Our analysis revealed that lung capEC are transcriptionally different than PCV. Comparison of top differentially expressed genes (DEGs) of capEC and PCV revealed that capEC responses are different than PCV during sepsis. It was found that capEC are more enriched with genes related to regulation of coagulation, vascular permeability, wound healing and lipid metabolic processes after sepsis. In contrast, PCV are more enriched with genes related to chemotaxis, cell-cell adhesion by integrins, chemokine biosynthesis, regulation of actin filament process and neutrophil homeostasis after sepsis. In addition, we predicted some transcription factor targets that regulate a significant number of DEGs in sepsis. We proposed that targeting certain DEGs or transcriptional factors would be useful in protecting against sepsis-induced lung damage.

Indexed as

AnimalsCapillariesCecumDisease Models, AnimalEndothelial CellsInflammationLungMaleMiceMice, Inbred C57BLSepsisTranscription FactorsTranscriptomeVenulesTranscription Factorsendothelial cellsinflammationlungRNAseqsepsis

Identifiers

PMID34638535
PMCPMC8507973
OpenAlexW3198972786

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.