Evidence map›Paper›PMID 34637774›Full record

ArticleMathematical biosciences2021

A general model of multivalent binding with ligands of heterotypic subunits and multiple surface receptors.

Zhixin Cyrillus Tan, Aaron S Meyer

Open access · hybridAbstract read
In one paragraph

Article in Mathematical biosciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A quantitative view of strategies to engineer cell-selective ligand binding.Integrative biology : quantitative biosciences from nano to macro · 2021
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Zhixin Cyrillus TanBioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, California, 90095, United States.
Aaron S MeyerBioinformatics Interdepartmental Program, University of California, Los Angeles, Los Angeles, California, 90095, United States; Department of Bioengineering, University of California, Los Angeles, Los Angeles, California, 90095, United States; Jonsson Comprehensive Cancer Center, University of California, Los Angeles, Los Angeles, California, 90095, United States; Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California, Los Angeles, Los Angeles, California, 90095, United States. Electronic address: ameyer@asmlab.org.
University of California, Los Angeles · US

Funding

Mapping the effector response space of antibody combinationsU01AI148119 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MEYER, AARON SAMUEL, NIMMERJAHN, FALK · 2020 to 2024
$1.6M
NIAID NIH HHS U01 AI148119
6 · The paper itself

Abstract

Multivalent cell surface receptor binding is a ubiquitous biological phenomenon with functional and therapeutic significance. Predicting the amount of ligand binding for a cell remains an important question in computational biology as it can provide great insight into cell-to-cell communication and rational drug design toward specific targets. In this study, we extend a mechanistic, two-step multivalent binding model. This model predicts the behavior of a mixture of different multivalent ligand complexes binding to cells expressing various types of receptors. It accounts for the combinatorially large number of interactions between multiple ligands and receptors, optionally allowing a mixture of complexes with different valencies and complexes that contain heterogeneous ligand units. We derive the macroscopic predictions and demonstrate how this model enables large-scale predictions on mixture binding and the binding space of a ligand. This model thus provides an elegant and computationally efficient framework for analyzing multivalent binding.

Indexed as

Computational BiologyReceptors, Cell SurfaceLigandsLigandsReceptors, Cell SurfaceCell surface reactionsCombinatoricsGeneral binding modelMultivalent bindingProtein-protein interactionsReceptor-ligand interactions

Identifiers

PMID34637774
PMCPMC8612982
OpenAlexW3207462472

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.