Evidence map›Paper›PMID 34637470›Full record

ArticlePloS one2021

Genetic variability and evolutionary dynamics of atypical Papaya ringspot virus infecting Papaya.

Anam Saleem, Zahid Ali, Shyi-Dong Yeh, Wajeeha Saeed, Amna Binat Imdad, Muhammad Faheem Akbar, Richard E Goodman, Saadia Naseem

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Molecular Variation and Genomic Function of Citrus Vein Enation Virus.International journal of molecular sciences · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Anam SaleemDepartment of Biosciences, Plant Biotechnology and Molecular Pharming Lab, COMSATS University Islamabad (CUI), Islamabad, Pakistan.
Zahid AliDepartment of Biosciences, Plant Biotechnology and Molecular Pharming Lab, COMSATS University Islamabad (CUI), Islamabad, Pakistan.ORCID 0000-0003-3935-6816
Shyi-Dong YehDepartment of Plant Pathology, National Chung Hsing University, Taichung, Taiwan.
Wajeeha SaeedDepartment of Biosciences, Plant Biotechnology and Molecular Pharming Lab, COMSATS University Islamabad (CUI), Islamabad, Pakistan.
Amna Binat ImdadDepartment of Biosciences, Plant Biotechnology and Molecular Pharming Lab, COMSATS University Islamabad (CUI), Islamabad, Pakistan.
Muhammad Faheem AkbarDepartment of Agriculture and Agribusiness Management, University of Karachi, Karachi, Pakistan.
Richard E GoodmanDepartment of Food Science and Technology, University of Nebraska-Lincoln, Lincoln, NE, United States of America.ORCID 0000-0001-8243-2285
Saadia NaseemDepartment of Biosciences, Plant Biotechnology and Molecular Pharming Lab, COMSATS University Islamabad (CUI), Islamabad, Pakistan.ORCID 0000-0003-4464-1486
COMSATS University Islamabad · PKNational Chung Hsing University · TWUniversity of Karachi · PKUniversity of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Papaya ringspot virus biotype-P is a detrimental pathogen of economically important papaya and cucurbits worldwide. The mutation prone feature of this virus perhaps accounts for its geographical dissemination. In this study, investigations of the atypical PRSV-P strain was conducted based on phylogenetic, recombination and genetic differentiation analyses considering of it's likely spread across India and Bangladesh. Full length genomic sequences of 38 PRSV isolates and 35 CP gene sequences were subjected to recombination analysis. A total of 61 recombination events were detected in aligned complete PRSV genome sequences. 3 events were detected in complete genome of PRSV strain PK whereas one was in its CP gene sequence. The PRSV-PK appeared to be recombinant of a major parent from Bangladesh. However, the genetic differentiation based on full length genomic sequences revealed less frequent gene flow between virus PRSV-PK and the population from America, India, Colombia, other Asian Countries and Australia. Whereas, frequent gene flow exists between Pakistan and Bangladesh virus populations. These results provided evidence correlating geographical position and genetic distances. We speculate that the genetic variations and evolutionary dynamics of this virus may challenge the resistance developed in papaya against PRSV and give rise to virus lineage because of its atypical emergence where geographic spread is already occurring.

Indexed as

Evolution, MolecularGenetic Variation3' Untranslated RegionsBase SequenceCaricaGene FlowGenome, ViralLikelihood FunctionsPhylogenyPlant DiseasesPotyvirusRecombination, GeneticStatistics as Topic3' Untranslated Regions

Identifiers

PMID34637470
PMCPMC8509892
OpenAlexW3112647402

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.