Evidence map›Paper›PMID 34636933›Full record

ArticleAbdominal radiology (New York)2022

Machine learning principles applied to CT radiomics to predict mucinous pancreatic cysts.

Adam M Awe, Michael M Vanden Heuvel, Tianyuan Yuan, Victoria R Rendell, Mingren Shen, Agrima Kampani, Shanchao Liang, Dane D Morgan, Emily R Winslow, Meghan G Lubner

Abstract read
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Article in Abdominal radiology (New York), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Adam M AweDepartment of Radiology, University of Wisconsin School of Medicine & Public Health, E3/311 Clinical Sciences Center, 600 Highland Ave, Madison, WI, 53792, USA.
Michael M Vanden HeuvelDepartment of Computer Sciences, University of Wisconsin - Madison, Madison, WI, USA.
Tianyuan YuanDepartment of Computer Sciences, University of Wisconsin - Madison, Madison, WI, USA.
Victoria R RendellDepartment of Surgery, University of Wisconsin School of Medicine & Public Health, Madison, WI, USA.
Mingren ShenDepartment of Materials Science and Engineering, University of Wisconsin - Madison, Madison, WI, USA.
Agrima KampaniDepartment of Computer Sciences, University of Wisconsin - Madison, Madison, WI, USA.
Shanchao LiangDepartment of Computer Sciences, University of Wisconsin - Madison, Madison, WI, USA.
Dane D MorganDepartment of Materials Science and Engineering, University of Wisconsin - Madison, Madison, WI, USA.
Emily R WinslowMedstar Georgetown Transplant Institute, Medstar Georgetown University Hospital, Washington, DC, USA.
Meghan G LubnerDepartment of Radiology, University of Wisconsin School of Medicine & Public Health, E3/311 Clinical Sciences Center, 600 Highland Ave, Madison, WI, 53792, USA. mlubner@uwhealth.org.ORCID http://orcid.org/0000-0003-3788-2871

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeCurrent diagnostic and treatment modalities for pancreatic cysts (PCs) are invasive and are associated with patient morbidity. The purpose of this study is to develop and evaluate machine learning algorithms to delineate mucinous from non-mucinous PCs using non-invasive CT-based radiomics.

methodsA retrospective, single-institution analysis of patients with non-pseudocystic PCs, contrast-enhanced computed tomography scans within 1 year of resection, and available surgical pathology were included. A quantitative imaging software platform was used to extract radiomics. An extreme gradient boosting (XGBoost) machine learning algorithm was used to create mucinous classifiers using texture features only, or radiomic/radiologic and clinical combined models. Classifiers were compared using performance scoring metrics. Shapely additive explanation (SHAP) analyses were conducted to identify variables most important in model construction.

resultsOverall, 99 patients and 103 PCs were included in the analyses. Eighty (78%) patients had mucinous PCs on surgical pathology. Using multiple fivefold cross validations, the texture features only and combined XGBoost mucinous classifiers demonstrated an area under the curve of 0.72 ± 0.14 and 0.73 ± 0.14, respectively. By SHAP analysis, root mean square, mean attenuation, and kurtosis were the most predictive features in the texture features only model. Root mean square, cyst location, and mean attenuation were the most predictive features in the combined model.

conclusionMachine learning principles can be applied to PC texture features to create a mucinous phenotype classifier. Model performance did not improve with the combined model. However, specific radiomic, radiologic, and clinical features most predictive in our models can be identified using SHAP analysis.

Indexed as

Machine LearningPancreatic CystAlgorithmsHumansRetrospective StudiesTomography, X-Ray ComputedMachine learningMucinous phenotypePancreatic cystRadiomicsTexture features

Identifiers

PMID34636933

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.