Evidence map›Paper›PMID 34635054›Full record

ArticleBMC genomics2021

The genetic impact of an Ebola outbreak on a wild gorilla population.

Claudia Fontsere, Peter Frandsen, Jessica Hernandez-Rodriguez, Jonas Niemann, Camilla Hjorth Scharff-Olsen, Dominique Vallet, Pascaline Le Gouar, Nelly Ménard, Arcadi Navarro, Hans R Siegismund and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Local genetic adaptation to habitat in wild chimpanzees.bioRxiv : the preprint server for biology · 2024
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 6 countries.

Claudia Fontsere *Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain. claudia.fontsere@upf.edu.
Peter Frandsen *Research and Conservation, Copenhagen Zoo, 2000, Frederiksberg, Denmark.
Jessica Hernandez-RodriguezInstitut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain.
Jonas NiemannCenter for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, 1353, Copenhagen, Denmark.
Camilla Hjorth Scharff-OlsenCenter for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, 1353, Copenhagen, Denmark.
Dominique ValletUMR 6553, ECOBIO: Ecosystems, Biodiversity, Evolution, CNRS/University of Rennes 1, Station Biologique de Paimpont, 35380, Paimpont, France.
Pascaline Le GouarUMR 6553, ECOBIO: Ecosystems, Biodiversity, Evolution, CNRS/University of Rennes 1, Station Biologique de Paimpont, 35380, Paimpont, France.
Nelly MénardUMR 6553, ECOBIO: Ecosystems, Biodiversity, Evolution, CNRS/University of Rennes 1, Station Biologique de Paimpont, 35380, Paimpont, France.
Arcadi NavarroInstitut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain.
Hans R SiegismundDepartment of Biology, Section for Computational and RNA Biology, University of Copenhagen, Ole Maaløes Vej 5, 2200, Copenhagen, Denmark.
Christina HvilsomResearch and Conservation, Copenhagen Zoo, 2000, Frederiksberg, Denmark.
M Thomas P GilbertCenter for Evolutionary Hologenomics, The GLOBE Institute, University of Copenhagen, 1353, Copenhagen, Denmark.
Martin Kuhlwilm *Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain. martin.kuhlwilm@univie.ac.at.
David Hughes *Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain.
Tomas Marques-Bonet *Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, 08003, Barcelona, Catalonia, Spain. tomas.marques@upf.edu.
University of Copenhagen · DKEcosystèmes, Biodiversité, Evolution · FRUniversitat Pompeu Fabra · ESBarcelona Institute of Science and Technology · ESCentre National de la Recherche Scientifique · FRConsejo Superior de Investigaciones Científicas · ESCopenhagen Zoo · DKInstitut de Biologia Evolutiva · ESNorwegian University of Science and Technology · NOPasqual Maragall Foundation · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundNumerous Ebola virus outbreaks have occurred in Equatorial Africa over the past decades. Besides human fatalities, gorillas and chimpanzees have also succumbed to the fatal virus. The 2004 outbreak at the Odzala-Kokoua National Park (Republic of Congo) alone caused a severe decline in the resident western lowland gorilla (Gorilla gorilla gorilla) population, with a 95% mortality rate. Here, we explore the immediate genetic impact of the Ebola outbreak in the western lowland gorilla population.

resultsAssociations with survivorship were evaluated by utilizing DNA obtained from fecal samples from 16 gorilla individuals declared missing after the outbreak (non-survivors) and 15 individuals observed before and after the epidemic (survivors). We used a target enrichment approach to capture the sequences of 123 genes previously associated with immunology and Ebola virus resistance and additionally analyzed the gut microbiome which could influence the survival after an infection. Our results indicate no changes in the population genetic diversity before and after the Ebola outbreak, and no significant differences in microbial community composition between survivors and non-survivors. However, and despite the low power for an association analysis, we do detect six nominally significant missense mutations in four genes that might be candidate variants associated with an increased chance of survival.

conclusionThis study offers the first insight to the genetics of a wild great ape population before and after an Ebola outbreak using target capture experiments from fecal samples, and presents a list of candidate loci that may have facilitated their survival.

Indexed as

Gastrointestinal MicrobiomeHemorrhagic Fever, EbolaAnimalsDisease OutbreaksGorilla gorillaHumansPan troglodytescandidate genesEbolagorillanon-invasive samples

Identifiers

PMID34635054
PMCPMC8504571
OpenAlexW3205542066

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.