Evidence map›Paper›PMID 34634047›Full record

ArticlePloS one2021

A hybridoma-derived monoclonal antibody with high homology to the aberrant myeloma light chain.

Ghasidit Pornnoppadol, Boya Zhang, Alec A Desai, Anthony Berardi, Henriette A Remmer, Peter M Tessier, Colin F Greineder

Abstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Fluorescence-activated droplet sequencing (FAD-seq) directly provides sequences of screening hits in antibody discovery.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Review
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ghasidit PornnoppadolDepartment of Pharmaceutical Sciences, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-0474-2031
Boya ZhangBioInterfaces Institute, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-3458-8220
Alec A DesaiBioInterfaces Institute, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-8322-7096
Anthony BerardiBioInterfaces Institute, University of Michigan, Ann Arbor, Michigan, United States of America.
Henriette A RemmerProteomics & Peptide Synthesis Core, University of Michigan, Ann Arbor, Michigan, United States of America.
Peter M TessierDepartment of Pharmaceutical Sciences, University of Michigan, Ann Arbor, Michigan, United States of America.
Colin F GreinederBioInterfaces Institute, University of Michigan, Ann Arbor, Michigan, United States of America.

Funding

Design and Evolution of Polyvalent Domain Antibodies Specific for Tau AggregatesRF1AG059723 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KANE, RAVI S., TESSIER, PETER M · 2018 to 2022
$2.4M
Structure-guided antibody targeting of pre-selected epitopes in amyloidogenic aggregatesR35GM136300 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TESSIER, PETER M · 2020 to 2024
$1.5M
ICAM-1 targeted thrombomodulin: an experimental therapeutic for the Acute Respiratory Distress SyndromeK08HL130430 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI GREINEDER, COLIN FRED · 2016 to 2020
$665k
NHLBI NIH HHS K08 HL130430NIA NIH HHS RF1 AG059723NIGMS NIH HHS R35 GM136300
6 · The paper itself

Abstract

The identification of antibody variable regions in the heavy (VH) and light (VL) chains from hybridomas is necessary for the production of recombinant, sequence-defined monoclonal antibodies (mAbs) and antibody derivatives. This process has received renewed attention in light of recent reports of hybridomas having unintended specificities due to the production of non-antigen specific heavy and/or light chains for the intended antigen. Here we report a surprising finding and potential pitfall in variable domain sequencing of an anti-human CD63 hybridoma. We amplified multiple VL genes from the hybridoma cDNA, including the well-known aberrant Sp2/0 myeloma VK and a unique, full-length VL. After finding that the unique VL failed to yield a functional antibody, we discovered an additional full-length sequence with surprising similarity (~95% sequence identify) to the non-translated myeloma kappa chain but with a correction of its key frameshift mutation. Expression of the recombinant mAb confirmed that this highly homologous sequence is the antigen-specific light chain. Our results highlight the complexity of PCR-based cloning of antibody genes and strategies useful for identification of correct sequences.

Indexed as

Amino Acid SequenceAnimalsAntibodies, MonoclonalCell LineCHO CellsCloning, MolecularCricetulusDNA, ComplementaryFrameshift MutationGenes, ImmunoglobulinHEK293 CellsHumansHybridomasImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsImmunoglobulin Variable RegionAntibodies, MonoclonalDNA, ComplementaryImmunoglobulin Heavy ChainsImmunoglobulin Light ChainsImmunoglobulin Variable RegionRecombinant ProteinsTetraspanin 30

Identifiers

PMID34634047
PMCPMC8504763

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.