Evidence map›Paper›PMID 34633491›Full record

ArticleMicrobial ecology2022

Dynamic Subspecies Population Structure of Vibrio cholerae in Dhaka, Bangladesh.

Tania Nasreen, Mohammad Tarequl Islam, Kevin Y H Liang, Fatema-Tuz Johura, Paul C Kirchberger, Eric Hill, Marzia Sultana, Rebecca J Case, Munirul Alam, Yann F Boucher

Abstract read
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In one paragraph

Article in Microbial ecology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

Tania NasreenDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E9, Canada.
Mohammad Tarequl IslamDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E9, Canada.
Kevin Y H LiangDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E9, Canada.
Fatema-Tuz JohuraInfectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.
Paul C KirchbergerDepartment of Integrative Biology, University of Texas At Austin, Austin, TX, 78712, USA.
Eric HillSaw Swee Hock School of Public Health, National University of Singapore and National University Hospital System, Singapore, Singapore.
Marzia SultanaInfectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.
Rebecca J CaseDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E9, Canada.
Munirul AlamInfectious Diseases Division, International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b), Dhaka, Bangladesh.
Yann F BoucherDepartment of Biological Sciences, University of Alberta, Edmonton, AB, T6G 2E9, Canada. ephyb@nus.edu.sg.
University of Alberta · CAInternational Centre for Diarrhoeal Disease Research · BDNational University Health System · SGNational University Hospital · SGThe University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholera has been endemic to the Ganges Delta for centuries. Although the causative agent, Vibrio cholerae, is autochthonous to coastal and brackish water, cholera occurs continually in Dhaka, the inland capital city of Bangladesh which is surrounded by fresh water. Despite the persistence of this problem, little is known about the environmental abundance and distribution of lineages of V. cholerae, the most important being the pandemic generating (PG) lineage consisting mostly of serogroup O1 strains. To understand spatial and temporal dynamics of PG lineage and other lineages belonging to the V. cholerae species in surface water in and around Dhaka City, we used qPCR and high-throughput amplicon sequencing. Seven different freshwater sites across Dhaka were investigated for six consecutive months, and physiochemical parameters were measured in situ. Total abundance of V. cholerae was found to be relatively stable throughout the 6-month sampling period, with 2 × 10

Indexed as

CholeraVibrio choleraeBangladeshHumansWaterWaterCholeraEndemicPandemicPandemic generating lineagePopulationsSubspeciesTania Nasreen and Mohammad Tarequl Islam authors contributed equallyV. choleraeVibrio

Identifiers

PMID34633491
OpenAlexW3149308363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.