Evidence map›Paper›PMID 34632562›Full record

ArticleTransgenic research2022

I-SceI and customized meganucleases-mediated genome editing in tomato and oilseed rape.

Benoit Danilo, Émilie Montes, Héloïse Archambeau, Maryse Lodé, Mathieu Rousseau-Gueutin, Anne-Marie Chèvre, Marianne Mazier

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Article in Transgenic research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Benoit DaniloGAFL UR 1052 , INRAE PACA , Avignon, France.
Émilie MontesIGEPP Université de Rennes , INRAE , Agrocampus Ouest, F-35650, Le Rheu, France.
Héloïse ArchambeauIGEPP Université de Rennes , INRAE , Agrocampus Ouest, F-35650, Le Rheu, France.
Maryse LodéIGEPP Université de Rennes , INRAE , Agrocampus Ouest, F-35650, Le Rheu, France.
Mathieu Rousseau-GueutinIGEPP Université de Rennes , INRAE , Agrocampus Ouest, F-35650, Le Rheu, France.
Anne-Marie ChèvreIGEPP Université de Rennes , INRAE , Agrocampus Ouest, F-35650, Le Rheu, France.
Marianne MazierGAFL UR 1052 , INRAE PACA , Avignon, France. marianne.mazier@inrae.fr.ORCID 0000-0002-1441-6897
Institut Agro Rennes-Angers · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Meganucleases are rare cutting enzymes that can generate DNA modifications and are part of the plant genome editing toolkit although they lack versatility. Here, we evaluated the use of two meganucleases, I-SceI and a customized meganuclease, in tomato and oilseed rape. Different strategies were explored for the use of these meganucleases. The activity of a customized and a I-SceI meganucleases was first estimated by the use of a reporter construct GFFP with the target sequences and enabled to demonstrate that both meganucleases can generate double-strand break and HDR mediated recombination in a reporter gene. Interestingly, I-SceI seems to have a higher DSB efficiency than the customized meganuclease: up to 62.5% in tomato and 44.8% in oilseed rape. Secondly, the same exogenous landing pad was introduced in both species. Despite being less efficient compared to I-SceI, the customized meganuclease was able to generate the excision of an exogenous transgene (large deletion of up to 3316 bp) present in tomato. In this paper, we also present some pitfalls to be considered before using meganucleases (e.g., potential toxicity) for plant genome editing.

Indexed as

Gene EditingSolanum lycopersicumDeoxyribonucleases, Type II Site-SpecificGenes, ReporterTransgenesDeoxyribonucleases, Type II Site-SpecificGenome editingMeganucleaseOilseed rapeTomato

Identifiers

PMID34632562
OpenAlexW3205712685

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.