Evidence map›Paper›PMID 34625747›Full record

ArticleNature structural & molecular biology2021

A structural model of a Ras-Raf signalosome.

Venkatesh P Mysore, Zhi-Wei Zhou, Chiara Ambrogio, Lianbo Li, Jonas N Kapp, Chunya Lu, Qi Wang, Maxwell R Tucker, Jeffrey J Okoro, Gabriela Nagy-Davidescu and 6 more

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
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  4. Review
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  10. Mechanism-Based Redesign of GAP to Activate Oncogenic Ras.Journal of the American Chemical Society · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Dynamic regulation of RAS and RAS signaling.The Biochemical journal · 2023
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 4 countries.

Venkatesh P Mysore *D. E. Shaw Research, New York, NY, USA.
Zhi-Wei Zhou *Departments of Biochemistry and Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Chiara Ambrogio *Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4122-701X
Lianbo LiDepartments of Biochemistry and Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0003-0107-7125
Jonas N KappDepartment of Biochemistry, University of Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0002-7308-559X
Chunya LuDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA.
Qi WangD. E. Shaw Research, New York, NY, USA.
Maxwell R TuckerD. E. Shaw Research, New York, NY, USA.ORCID http://orcid.org/0000-0002-1606-8806
Jeffrey J OkoroDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Gabriela Nagy-DavidescuDepartment of Biochemistry, University of Zürich, Zürich, Switzerland.
Xiaochen BaiDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0002-4234-5686
Andreas PlückthunDepartment of Biochemistry, University of Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0003-4191-5306
Pasi A JänneDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7821-4928
Kenneth D WestoverDepartments of Biochemistry and Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, TX, USA.ORCID http://orcid.org/0000-0003-3653-5923
Yibing ShanD. E. Shaw Research, New York, NY, USA. Yibing.Shan@DEShawResearch.com.ORCID http://orcid.org/0000-0002-3865-8110
David E ShawD. E. Shaw Research, New York, NY, USA. David.Shaw@DEShawResearch.com.ORCID http://orcid.org/0000-0001-8265-5761
D. E. Shaw Research · USThe University of Texas Southwestern Medical Center · USDana-Farber Cancer Institute · USUniversity of Zurich · CHFirst Affiliated Hospital of Zhengzhou University · CN

Funding

Characterization and targeting of rapid nucleotide exchange RAS mutationsR01CA244341 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI WESTOVER, KENNETH · 2020 to 2024
$1.8M
Structural insights into the unique activation mechanisms of receptor tyrosine kinasesR01GM143158 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI BAI, XIAOCHEN · 2021 to 2024
$1.6M
NCI NIH HHS R01 CA244341NIGMS NIH HHS R01 GM143158
6 · The paper itself

Abstract

The protein K-Ras functions as a molecular switch in signaling pathways regulating cell growth. In the human mitogen-activated protein kinase (MAPK) pathway, which is implicated in many cancers, multiple K-Ras proteins are thought to assemble at the cell membrane with Ras effector proteins from the Raf family. Here we propose an atomistic structural model for such an assembly. Our starting point was an asymmetric guanosine triphosphate-mediated K-Ras dimer model, which we generated using unbiased molecular dynamics simulations and verified with mutagenesis experiments. Adding further K-Ras monomers in a head-to-tail fashion led to a compact helical assembly, a model we validated using electron microscopy and cell-based experiments. This assembly stabilizes K-Ras in its active state and presents composite interfaces to facilitate Raf binding. Guided by existing experimental data, we then positioned C-Raf, the downstream kinase MEK1 and accessory proteins (Galectin-3 and 14-3-3σ) on and around the helical assembly. The resulting Ras-Raf signalosome model offers an explanation for a large body of data on MAPK signaling.

Indexed as

Blood ProteinsDNA-Binding ProteinsFluorescence Resonance Energy TransferGalectinsGTPase-Activating ProteinsGuanosine TriphosphateHEK293 CellsHumansMAP Kinase Kinase 1Microscopy, ElectronMicroscopy, Electron, TransmissionMolecular Dynamics SimulationMultiprotein ComplexesMutagenesisProtein MultimerizationProto-Oncogene Proteins c-rafBlood ProteinsDNA-Binding ProteinsGalectinsGTPase-Activating ProteinsGuanosine TriphosphateKRAS protein, humanLGALS3 protein, humanMAP2K1 protein, humanMAP Kinase Kinase 1Multiprotein ComplexesProto-Oncogene Proteins c-rafProto-Oncogene Proteins p21(ras)Raf1 protein, humanSLC2A4RG protein, humanTranscription Factors

Identifiers

PMID34625747
PMCPMC8643099
OpenAlexW3204513074

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.