Evidence map›Paper›PMID 34624272›Full record

ArticleBiophysical journal2021

Two nondimensional parameters for characterizing the nuclear morphology.

Sreenath Balakrishnan, Shilpa R Raju, Anwesha Barua, Reshma P Pradeep, Gondi Kondaiah Ananthasuresh

Open access · greenAbstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Sreenath BalakrishnanSchool of Mechanical Sciences, Indian Institute of Technology Goa, Goa, India. Electronic address: sreenath@iitgoa.ac.in.
Shilpa R RajuMechanical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.
Anwesha BaruaBioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.
Reshma P PradeepSchool of Physical Sciences, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, India.
Gondi Kondaiah AnanthasureshMechanical Engineering, Indian Institute of Science, Bengaluru, Karnataka, India; BioSystems Science and Engineering, Indian Institute of Science, Bengaluru, Karnataka, India.
Indian Institute of Science Bangalore · INIndian Institute of Science Education and Research Thiruvananthapuram · INIndian Institute of Technology Goa · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nuclear morphology is an important indicator of cell function. It is regulated by a variety of factors such as the osmotic pressure difference between the nucleoplasm and cytoplasm, cytoskeletal forces, elasticity of the nuclear envelope and chromosomes. Nucleus shape and size are typically quantified using multiple geometrical quantities that are not necessarily independent of one another. This interdependence makes it difficult to decipher the implications of changes in nuclear morphology. We resolved this by analyzing nucleus shapes of populations for multiple cell lines using a mechanics-based model. We deduced two independent nondimensional parameters, namely, flatness index and isometric scale factor. We show that nuclei in a cell population have similar flatness but variable scale factor. Furthermore, nuclei of different cell lines segregate according to flatness. Cellular perturbations using biochemical and biomechanical techniques suggest that the flatness index correlates with actin tension and the scale factor anticorrelates with elastic modulus of nuclear envelope. We argue that nuclear morphology measures such as volume, projected area, height etc., are subsumed by flatness and scale factor, which can unambiguously characterize nuclear morphology.

Indexed as

Cell NucleusCytoskeletonActinsCell Nucleus ShapeCytoplasmNuclear EnvelopeActins

Identifiers

PMID34624272
PMCPMC8595738
OpenAlexW3202652602

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.