Evidence map›Paper›PMID 34623427›Full record

ReviewEssays in biochemistry2021

SINEUPs: a novel toolbox for RNA therapeutics.

Stefano Espinoza, Carlotta Bon, Paola Valentini, Bianca Pierattini, Abraham Tettey Matey, Devid Damiani, Salvatore Pulcrano, Remo Sanges, Francesca Persichetti, Hazuki Takahashi and 4 more

Open access · bronzeAbstract readReview
In one paragraph

Review in Essays in biochemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Review
  8. SINEUP RNA rescues molecular phenotypes associated with CHD8 suppression in autism spectrum disorder model systems.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  9. Review
  10. Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Roles of lncRNAs in brain development and pathogenesis: Emerging therapeutic opportunities.Molecular therapy : the journal of the American Society of Gene Therapy · 2023
    Review
  16. Article
  17. Towards SINEUP-based therapeutics: Design of anMolecular therapy. Nucleic acids · 2022
    Article
  18. Review
  19. Frontiers in cell and developmental biology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Stefano Espinoza *Central RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0002-3048-4822
Carlotta Bon *Central RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0002-7443-4659
Paola ValentiniCentral RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0002-0781-3691
Bianca PierattiniCentral RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0001-5023-7629
Abraham Tettey MateyArea of Neuroscience, International School for Advanced Studies (SISSA), Trieste, Italy.ORCID 0000-0001-9260-0940
Devid DamianiCentral RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0003-2962-6296
Salvatore PulcranoCentral RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.
Remo SangesCentral RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0002-5047-9713
Francesca PersichettiDepartment of Health Sciences and Research Center on Autoimmune and Allergic Diseases (CAAD), University of Piemonte Orientale (UPO), Novara, Italy.ORCID 0000-0002-9804-644X
Hazuki TakahashiLaboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, 230-0045 Japan.ORCID 0000-0001-7315-7349
Piero CarninciLaboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, 230-0045 Japan.ORCID 0000-0001-7202-7243
Claudio SantoroDepartment of Health Sciences and Research Center on Autoimmune and Allergic Diseases (CAAD), University of Piemonte Orientale (UPO), Novara, Italy.ORCID 0000-0002-4552-9624
Diego CotellaDepartment of Health Sciences and Research Center on Autoimmune and Allergic Diseases (CAAD), University of Piemonte Orientale (UPO), Novara, Italy.ORCID 0000-0003-2714-4744
Stefano GustincichCentral RNA Laboratory, Istituto Italiano di Tecnologia (IIT), Genova, Italy.ORCID 0000-0002-2749-2514
Italian Institute of Technology · ITScuola Internazionale Superiore di Studi Avanzati · ITUniversità degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITHuman Technopole · ITRIKEN Center for Integrative Medical Sciences · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

RNA molecules have emerged as a new class of promising therapeutics to expand the range of druggable targets in the genome. In addition to 'canonical' protein-coding mRNAs, the emerging richness of sense and antisense long non-coding RNAs (lncRNAs) provides a new reservoir of molecular tools for RNA-based drugs. LncRNAs are composed of modular structural domains with specific activities involving the recruitment of protein cofactors or directly interacting with nucleic acids. A single therapeutic RNA transcript can then be assembled combining domains with defined secondary structures and functions, and antisense sequences specific for the RNA/DNA target of interest. As the first representative molecules of this new pharmacology, we have identified SINEUPs, a new functional class of natural antisense lncRNAs that increase the translation of partially overlapping mRNAs. Their activity is based on the combination of two domains: an embedded mouse inverted SINEB2 element that enhances mRNA translation (effector domain) and an overlapping antisense region that provides specificity for the target sense transcript (binding domain). By genetic engineering, synthetic SINEUPs can potentially target any mRNA of interest increasing translation and therefore the endogenous level of the encoded protein. In this review, we describe the state-of-the-art knowledge of SINEUPs and discuss recent publications showing their potential application in diseases where a physiological increase of endogenous protein expression can be therapeutic.

Indexed as

Protein BiosynthesisRNA, Long NoncodingAnimalsMiceProteinsRNA, AntisenseRNA, MessengerProteinsRNA, AntisenseRNA, Long NoncodingRNA, Messengerlong non-coding RNARNA therapeuticsSINEUPs

Identifiers

PMID34623427
PMCPMC8564737
OpenAlexW3203782862

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.