ArticleCommunications biology2021
A chromosome-level genome sequence of Chrysanthemum seticuspe, a model species for hexaploid cultivated chrysanthemum.
Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
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Who cites it
39 citing papers in PubMed.
- The origin and domestication of modern cultivated Chrysanthemum × morifolium.Nature plants · 2026Article
- CsFDL1-CsFTL3 Complex Represses CsFTL3 via Negative Feedback to Fine-Tune Flowering in Chrysanthemum seticuspe.Plant, cell & environment · 2026Article
- Polyploidization enhances plant resistance toHorticulture research · 2026Article
- Genome-wide identification of the CmPLATZ gene family and its role in cold acclimation and overwintering in Chrysanthemum morifolium.BMC plant biology · 2026Article
- Comparative Enzymology and Biomass Hydrolysis Reveal Industrial Biorefining Potential ofMicroorganisms · 2026Article
- Chromosome-level genome assembly of the Gerbera (Gerbera hybrida) using HiFi long-read and Hi-C technologies.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026Article
- Comparative analysis to investigate a possible mechanism for cell enlargement in succulent leaves of Crassothonna capensis (Asteraceae).Journal of plant research · 2026Article
- Comparative genomic analysis of Artemisia argyi reveals asymmetric expansion of terpene synthases and conservation of artemisinin biosynthesis.The Plant journal : for cell and molecular biology · 2025Article
- Volcano: a pipeline to characterize long terminal repeat-retrotransposons families in plants.Bioinformatics advances · 2025Article
- CGD: a multi-omics database forHorticulture research · 2024Article
- Identification of SDG gene family members and exploration of flowering related genes in different cultivars of chrysanthemums and their wild ancestors.BMC plant biology · 2024Article
- Construction of Optimal Regeneration System for Chrysanthemum '11-C-2' Stem Segment with Buds.Plants (Basel, Switzerland) · 2024Article
- Floral Response to Heat: A Study of Color and Biochemical Adaptations in Purple Chrysanthemums.Plants (Basel, Switzerland) · 2024Article
- An improved genome assembly of Chrysanthemum nankingense reveals expansion and functional diversification of terpene synthase gene family.BMC genomics · 2024Article
- The ancestral karyotype of the Heliantheae Alliance, herbicide resistance, and human allergens: Insights from the genomes of common and giant ragweed.The plant genome · 2024Article
- cla-miR164-Horticulture research · 2024Article
- Genomic evidence for rediploidization and adaptive evolution following the whole-genome triplication.Nature communications · 2024Article
- Assessing Amounts of Genetic Variability in Key Horticultural Traits Underlying Core Korean Breeding Lines of Cut Chrysanthemums.Plants (Basel, Switzerland) · 2024Article
- Asteraceae genome database: a comprehensive platform for Asteraceae genomics.Frontiers in plant science · 2024Article
- CT image-based 3D inflorescence estimation ofFrontiers in plant science · 2024Article
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Authors and funding
18 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Chrysanthemums are one of the most industrially important cut flowers worldwide. However, their segmental allopolyploidy and self-incompatibility have prevented the application of genetic analysis and modern breeding strategies. We thus developed a model strain, Gojo-0 (Chrysanthemum seticuspe), which is a diploid and self-compatible pure line. Here, we present the 3.05 Gb chromosome-level reference genome sequence, which covered 97% of the C. seticuspe genome. The genome contained more than 80% interspersed repeats, of which retrotransposons accounted for 72%. We identified recent segmental duplication and retrotransposon expansion in C. seticuspe, contributing to arelatively large genome size. Furthermore, we identified a retrotransposon family, SbdRT, which was enriched in gene-dense genome regions and had experienced a very recent transposition burst. We also demonstrated that the chromosome-level genome sequence facilitates positional cloning in C. seticuspe. The genome sequence obtained here can greatly contribute as a reference for chrysanthemum in front-line breeding including genome editing.
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