Evidence map›Paper›PMID 34620912›Full record

ArticleScientific reports2021

Modular fluorescent nanoparticle DNA probes for detection of peptides and proteins.

Cassandra M Stawicki, Torri E Rinker, Markus Burns, Sonal S Tonapi, Rachel P Galimidi, Deepthi Anumala, Julia K Robinson, Joshua S Klein, Parag Mallick

Abstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Review
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  4. Article
  5. Review
  6. Article
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  8. Review
  9. PhotocleavableChemical reviews · 2023
    Review
  10. Review
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Cassandra M Stawicki *Nautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Torri E Rinker *Nautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA. torrir@nautilus.bio.
Markus BurnsNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Sonal S TonapiNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Rachel P GalimidiNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Deepthi AnumalaNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Julia K RobinsonNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Joshua S KleinNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.
Parag MallickNautilus Biotechnology, 201 Industrial Rd #310, San Carlos, CA, 94070, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fluorescently labeled antibody and aptamer probes are used in biological studies to characterize binding interactions, measure concentrations of analytes, and sort cells. Fluorescent nanoparticle labels offer an excellent alternative to standard fluorescent labeling strategies due to their enhanced brightness, stability and multivalency; however, challenges in functionalization and characterization have impeded their use. This work introduces a straightforward approach for preparation of fluorescent nanoparticle probes using commercially available reagents and common laboratory equipment. Fluorescent polystyrene nanoparticles, Thermo Fisher Scientific FluoSpheres, were used in these proof-of-principle studies. Particle passivation was achieved by covalent attachment of amine-PEG-azide to carboxylated particles, neutralizing the surface charge from - 43 to - 15 mV. A conjugation-annealing handle and DNA aptamer probe were attached to the azide-PEG nanoparticle surface either through reaction of pre-annealed handle and probe or through a stepwise reaction of the nanoparticles with the handle followed by aptamer annealing. Nanoparticles functionalized with DNA aptamers targeting histidine tags and VEGF protein had high affinity (EC

Indexed as

Biosensing TechniquesAmino Acid SequenceAptamers, NucleotideBase SequenceDNA ProbesFluorescent DyesHumansNanoparticlesNanotechnologyPeptidesPolyethylene GlycolsProteinsQuantum DotsStaining and LabelingAptamers, NucleotideDNA ProbesFluorescent DyesPeptidesPolyethylene GlycolsProteins

Identifiers

PMID34620912
PMCPMC8497506

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.