Evidence map›Paper›PMID 34620088›Full record

ArticleBMC genomics2021

Genome-wide identification, genomic organization, and expression profiling of the CONSTANS-like (COL) gene family in petunia under multiple stresses.

Khadiza Khatun, Sourav Debnath, Arif Hasan Khan Robin, Antt Htet Wai, Ujjal Kumar Nath, Do-Jin Lee, Chang-Kil Kim, Mi-Young Chung

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome-Wide Analysis and Expression Profiles of AhCOLs Family in Peanut (International journal of molecular sciences · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Genome-wide identification of the mangoFrontiers in plant science · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 3 countries.

Khadiza KhatunDepartment of Biotechnology, Patuakhali Science and Technology University, Patuakhali, 8602, Bangladesh.
Sourav DebnathDepartment of Biochemistry and Food Analysis, Patuakhali Science and Technology University, Patuakhali, 8602, Bangladesh.
Arif Hasan Khan RobinDepartment of Genetics and Plant Breeding, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh.
Antt Htet WaiDepartment of Biology, Yangon University of Education, Kamayut Township, 11041, Yangon, Yangon Region, Myanmar.
Ujjal Kumar NathDepartment of Genetics and Plant Breeding, Bangladesh Agricultural University, Mymensingh, 2202, Bangladesh.
Do-Jin LeeDepartment of Agricultural Education, Sunchon National University, 255 Jungangno, Suncheon, Jeonnam, 57922, Republic of Korea.
Chang-Kil KimDepartment of Horticulture, Kyungpook National University, Daegu, South Korea. ckkim@knu.ac.kr.
Mi-Young ChungDepartment of Agricultural Education, Sunchon National University, 255 Jungangno, Suncheon, Jeonnam, 57922, Republic of Korea. queen@sunchon.ac.kr.
Bangladesh Agricultural University · BDPatuakhali Science and Technology University · BDSunchon National University · KRKyungpook National University · KRYangon University of Education · MM

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCONSTANS-like (CO-like, COL) are putative zinc-finger transcription factors known to play vital role in various plant biological processes such as control of flowering time, regulation of plant growth and development and responses to stresses. However, no systematic analysis of COL family gene regarding the plant development and stress response has been previously performed in any solanaceous crop. In the present study, a comprehensive genome-wide analysis of COL family genes in petunia has been conducted to figure out their roles in development of organs and stress response.

resultsA total of 33 COL genes, 15 PaCOL genes in P. axillaris and 18 PiCOL genes in P. inflata, were identified in petunia. Subsequently, a genome-wide systematic analysis was performed in 15 PaCOL genes. Considering the domain composition and sequence similarity the 15 PaCOL and 18 PiCOL genes were phylogenetically classified into three groups those are conserved among the flowering plants. Moreover, all of the 15 PaCOL proteins were localized in nucleus. Furthermore, differential expression patterns of PaCOL genes were observed at different developmental stages of petunia. Additionally, transcript expression of 15 PaCOL genes under various abiotic and phytohormone treatments showed their response against stresses. Moreover, several cis-elements related to stress, light-responsive, hormone signaling were also detected in different PaCOL genes.

conclusionThe phylogenetic clustering, organ specific expression pattern and stress responsive expression profile of conserved petunia COL genes indicating their involvement in plant growth and development and stress response mechanism. This work provide a significant foundation for understanding the biological roles of petunia COL genes in plant growth, development and in stress response.

Indexed as

PetuniaGene Expression Regulation, PlantGenomicsPhylogenyPlant ProteinsStress, PhysiologicalPlant ProteinsAbiotic stressesConstans-like gene (COL)Expression patternsGenome-wide analysisPetunia

Identifiers

PMID34620088
PMCPMC8499527
OpenAlexW3136202978

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.