Evidence map›Paper›PMID 34618554›Full record

ArticleScience immunology2021

SARS-CoV-2 infection generates tissue-localized immunological memory in humans.

Maya M L Poon, Ksenia Rybkina, Yu Kato, Masaru Kubota, Rei Matsumoto, Nathaniel I Bloom, Zeli Zhang, Kathryn M Hastie, Alba Grifoni, Daniela Weiskopf and 15 more

Open access · greenAbstract read
In one paragraph

Article in Science immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 151 papers.

0numbers the graph read from it
0cells of the map it votes in
151citing papers in PubMed
12.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

151 citing papers in PubMed, 228 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

91 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 3 institutions in 1 country.

Maya M L PoonDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-7927-5853
Ksenia RybkinaDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Yu KatoCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0003-4743-1775
Masaru KubotaDepartment of Surgery, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-4095-738X
Rei MatsumotoDepartment of Surgery, Columbia University Irving Medical Center, New York, NY 10032, USA.
Nathaniel I BloomCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0002-6338-9098
Zeli ZhangCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.
Kathryn M HastieCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0002-3406-1210
Alba GrifoniCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0002-2209-5966
Daniela WeiskopfCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0003-2968-7371
Steven B WellsDepartment of Systems Biology, Columbia University Irving Medical Center, New York, NY 10032, USA.
Basak B UralDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-0671-2933
Nora LamDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-8933-3121
Peter A SzaboDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-1603-761X
Pranay DograDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-2031-9855
Yoon S LeeDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-9988-8905
Joshua I GrayDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0003-2796-5470
Marissa C BradleyDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, USA.
Maigan A BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0002-4331-2202
Todd M BruskoDepartment of Pathology, Immunology, and Laboratory Medicine, University of Florida, Gainesville, FL 32611, USA.ORCID 0000-0003-2878-9296
Erica O SaphireCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0002-1206-7451
Thomas J ConnorsDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0002-0199-7733
Alessandro SetteCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0001-7013-2250
Shane CrottyCenter of Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA 92037, USA.ORCID 0000-0002-6484-6262
Donna L FarberDepartment of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA.ORCID 0000-0001-8236-9183
Columbia University Irving Medical Center · USLa Jolla Institute for Immunology · USUniversity of Florida · US

Funding

T follicular helper (Tfh) CD4+ T cell, germinal center, and antibody response dysfunction in human recurrent tonsillitisU19AI142742 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Alessandro Sette · 2019 to 2026
$32.8M
Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
Viral Assays CoreU19AI128949 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber, Peter Alan Sims · 2017 to 2026
$26.4M
Development of lung T cell responses in infant respiratory immunityU01AI100119 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2017 to 2021
$3.9M
Development of lung T cell responses in infant respiratory immunityR01AI100119 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2012 to 2016
$2.6M
Immunobiology and alveolar physiology of the aging lungU01HL145547 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BHATTACHARYA, JAHAR, FARBER, DONNA L. · 2019 to 2022
$2.6M
Development of Localized T Cell Immunity in Pediatric Respiratory Tract InfectionK23AI141686 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CONNORS, THOMAS · 2019 to 2023
$973k
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
NCRR NIH HHS S10 RR027050NHLBI NIH HHS U01 HL145547NIAID NIH HHS K23 AI141686NIAID NIH HHS P01 AI106697NIAID NIH HHS R01 AI100119NIAID NIH HHS U01 AI100119NIAID NIH HHS U19 AI128949NIAID NIH HHS U19 AI142742NIH HHS S10 OD020056
6 · The paper itself

Abstract

Adaptive immune responses to SARS-CoV-2 infection have been extensively characterized in blood; however, most functions of protective immunity must be accomplished in tissues. Here, we report from examination of SARS-CoV-2 seropositive organ donors (ages 10 to 74) that CD4

Indexed as

Immunity, CellularImmunologic MemoryAntibodies, ViralCOVID-19FemaleHumansLymphocytesMaleOrgan SpecificitySARS-CoV-2Antibodies, Viral

Identifiers

PMID34618554
PMCPMC8626868
OpenAlexW3201944309

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.