Evidence map›Paper›PMID 34618227›Full record

ArticleArchives of virology2021

Repurposing the Hybrid Capture 2 (HC2) screening test for whole-genome sequencing of human papillomaviruses.

A Debernardi, W Jarassier, C Soret, C Mougin, S Alizon, I G Bravo, D Guenat, J L Prétet, Q Lepiller

Abstract read
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In one paragraph

Article in Archives of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

A DebernardiEA3181, UBFC, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France.
W JarassierCentre National de Référence Papillomavirus, CHRU de Besançon, Besançon, France.
C SoretEA3181, UBFC, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France.
C MouginEA3181, UBFC, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France.
S AlizonFrench National Center for Scientific Research (CNRS), Laboratory MIVEGEC (CNRS, IRD, Univ Montpellier), Montpellier, France.
I G BravoFrench National Center for Scientific Research (CNRS), Laboratory MIVEGEC (CNRS, IRD, Univ Montpellier), Montpellier, France.
D GuenatEA3181, UBFC, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France.
J L PrétetEA3181, UBFC, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France.
Q LepillerEA3181, UBFC, LabEx LipSTIC ANR-11-LABX-0021, Besançon, France. q1lepiller@chu-besancon.fr.ORCID http://orcid.org/0000-0003-2892-4216

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Simple and standardized approaches for genome analysis of human papillomavirus (HPV) by next-generation sequencing are needed. The aim of the study was to develop a protocol for direct deep sequencing of high-risk (hr) HPV strains, based on the widely used commercial Hybrid Capture 2 (QIAGEN) test, without any additional probe design. This protocol was applied to 15 HPV-positive and two HPV-negative cervical samples or cell lines and validated at the genotype level by comparing the sequencing results to those obtained using a commercial genotyping kit. The performance of our protocol, presented in this proof-of-principle study, supports its use for accurate characterization of genetic variants of hrHPV.

Indexed as

AlphapapillomavirusPapillomavirus InfectionsUterine Cervical NeoplasmsCervix UteriDNA, ViralFemaleGenotypeHumansPapillomaviridaeSensitivity and SpecificityDNA, Viral

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.