Evidence map›Paper›PMID 34618129›Full record

ArticlePlant physiology2021

DIOXYGENASE FOR AUXIN OXIDATION 1 catalyzes the oxidation of IAA amino acid conjugates.

Karel Müller, Petre Ivanov Dobrev, Aleš Pěnčík, Petr Hošek, Zuzana Vondráková, Roberta Filepová, Kateřina Malínská, Federica Brunoni, Lenka Helusová, Tomáš Moravec and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
7.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
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  7. Mechanisms of auxin action in plant growth and development.Nature reviews. Molecular cell biology · 2025
    Review
  8. Article
  9. Article
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  11. Review
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  13. RNA Sequencing Analysis and Verification ofPlants (Basel, Switzerland) · 2024
    Article
  14. Review
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  16. Article
  17. Chemical inhibition of the auxin inactivation pathway uncovers the roles of metabolic turnover in auxin homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  18. Article
  19. Frontiers in plant science · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Karel MüllerLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0002-0817-8810
Petre Ivanov DobrevLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0001-7412-6982
Aleš PěnčíkLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, and Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic.ORCID 0000-0002-1314-2249
Petr HošekLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0002-9359-4770
Zuzana VondrákováLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0001-6280-2381
Roberta FilepováLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.
Kateřina MalínskáLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0002-7928-9825
Federica BrunoniLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, and Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic.ORCID 0000-0003-1497-9419
Lenka HelusováLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.
Tomáš MoravecLaboratory of Virology, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.
Katarzyna RetzerLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0001-6074-7999
Karel HarantProteomics Core Facility, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, Vestec 252 42, Czech Republic.
Ondřej NovákLaboratory of Growth Regulators, Institute of Experimental Botany of the Czech Academy of Sciences, and Faculty of Science, Palacký University, Šlechtitelů 27, 783 71 Olomouc, Czech Republic.
Klára HoyerováLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0002-6335-6683
Jan PetrášekLaboratory of Hormonal Regulations in Plants, Institute of Experimental Botany of the Czech Academy of Sciences, Rozvojová 263, 165 02 Praha 6, Czech Republic.ORCID 0000-0002-6719-2735
Czech Academy of Sciences, Institute of Experimental Botany · CZCharles University · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Together with auxin transport, auxin metabolism is a key determinant of auxin signaling output by plant cells. Enzymatic machinery involved in auxin metabolism is subject to regulation based on numerous inputs, including the concentration of auxin itself. Therefore, experiments characterizing altered auxin availability and subsequent changes in auxin metabolism could elucidate the function and regulatory role of individual elements in the auxin metabolic machinery. Here, we studied auxin metabolism in auxin-dependent tobacco BY-2 cells. We revealed that the concentration of N-(2-oxindole-3-acetyl)-l-aspartic acid (oxIAA-Asp), the most abundant auxin metabolite produced in the control culture, dramatically decreased in auxin-starved BY-2 cells. Analysis of the transcriptome and proteome in auxin-starved cells uncovered significant downregulation of all tobacco (Nicotiana tabacum) homologs of Arabidopsis (Arabidopsis thaliana) DIOXYGENASE FOR AUXIN OXIDATION 1 (DAO1), at both transcript and protein levels. Auxin metabolism profiling in BY-2 mutants carrying either siRNA-silenced or CRISPR-Cas9-mutated NtDAO1, as well as in dao1-1 Arabidopsis plants, showed not only the expected lower levels of oxIAA, but also significantly lower abundance of oxIAA-Asp. Finally, ability of DAO1 to oxidize IAA-Asp was confirmed by an enzyme assay in AtDAO1-producing bacterial culture. Our results thus represent direct evidence of DAO1 activity on IAA amino acid conjugates.

Indexed as

Amino AcidsDioxygenasesNicotianaOxidation-ReductionPlant ProteinsAmino AcidsDioxygenasesPlant Proteins

Identifiers

PMID34618129
PMCPMC8418401
OpenAlexW3165603545

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.