Evidence map›Paper›PMID 34618060›Full record

ArticlePlant physiology2021

Impact of the SnRK1 protein kinase on sucrose homeostasis and the transcriptome during the diel cycle.

Bruno Peixoto, Thiago A Moraes, Virginie Mengin, Leonor Margalha, Rubén Vicente, Regina Feil, Melanie Höhne, António G G Sousa, Jingtao Lilue, Mark Stitt and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
12.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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  9. Sugar signaling modulates SHOOT MERISTEMLESS expression and meristem function inProceedings of the National Academy of Sciences of the United States of America · 2024
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  12. Review
  13. ATP homeostasis and signaling in plants.Plant communications · 2024
    Review
  14. Article
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  17. Article
  18. Article
  19. Assessing the impacts of genetic defects on starch metabolism inJournal of the Royal Society, Interface · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Bruno PeixotoInstituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal and GREEN-IT Bioresources for Sustainability, ITQB NOVA, 2780-157 Oeiras, Portugal.ORCID 0000-0002-1022-3908
Thiago A MoraesMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
Virginie MenginMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0002-4958-4209
Leonor MargalhaInstituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal and GREEN-IT Bioresources for Sustainability, ITQB NOVA, 2780-157 Oeiras, Portugal.
Rubén VicenteGREEN-IT Bioresources for Sustainability, ITQB NOVA, 2780-157 Oeiras, Portugal.
Regina FeilMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0002-9936-1337
Melanie HöhneMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.
António G G SousaInstituto Gulbenkian de Ciência, Bioinformatics Unit, 2780-156 Oeiras, Portugal.ORCID 0000-0003-4779-6459
Jingtao LilueInstituto Gulbenkian de Ciência, Bioinformatics Unit, 2780-156 Oeiras, Portugal.ORCID 0000-0002-1958-0231
Mark StittMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0002-4900-1763
John E LunnMax Planck Institute of Molecular Plant Physiology, 14476 Potsdam-Golm, Germany.ORCID 0000-0001-8533-3004
Elena Baena-GonzálezInstituto Gulbenkian de Ciência, 2780-156 Oeiras, Portugal and GREEN-IT Bioresources for Sustainability, ITQB NOVA, 2780-157 Oeiras, Portugal.
Max Planck Institute of Molecular Plant Physiology · DEInstituto Gulbenkian de Ciência · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SNF1-related Kinase 1 (SnRK1) is an evolutionarily conserved protein kinase with key functions in energy management during stress responses in plants. To address a potential role of SnRK1 under favorable conditions, we performed a metabolomic and transcriptomic characterization of rosettes of 20-d-old Arabidopsis (Arabidopsis thaliana) plants of SnRK1 gain- and loss-of-function mutants during the regular diel cycle. Our results show that SnRK1 manipulation alters the sucrose and trehalose 6-phosphate (Tre6P) relationship, influencing how the sucrose content is translated into Tre6P accumulation and modulating the flux of carbon to the tricarboxylic acid cycle downstream of Tre6P signaling. On the other hand, daily cycles of Tre6P accumulation were accompanied by changes in SnRK1 signaling, leading to a maximum in the expression of SnRK1-induced genes at the end of the night, when Tre6P levels are lowest, and to a minimum at the end of the day, when Tre6P levels peak. The expression of SnRK1-induced genes was strongly reduced by transient Tre6P accumulation in an inducible Tre6P synthase (otsA) line, further suggesting the involvement of Tre6P in the diel oscillations in SnRK1 signaling. Transcriptional profiling of wild-type plants and SnRK1 mutants also uncovered defects that are suggestive of an iron sufficiency response and of a matching induction of sulfur acquisition and assimilation when SnRK1 is depleted. In conclusion, under favorable growth conditions, SnRK1 plays a role in sucrose homeostasis and transcriptome remodeling in autotrophic tissues and its activity is influenced by diel fluctuations in Tre6P levels.

Indexed as

HomeostasisTranscriptomeArabidopsisArabidopsis ProteinsCircadian RhythmProtein Serine-Threonine KinasesSucroseArabidopsis ProteinsAt3g01090 protein, ArabidopsisProtein Serine-Threonine KinasesSucrose

Identifiers

PMID34618060
PMCPMC8566312
OpenAlexW3186002237

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.