Evidence map›Paper›PMID 34618058›Full record

ArticlePlant physiology2021

IRONMAN tunes responses to iron deficiency in concert with environmental pH.

Chandan Kumar Gautam, Huei-Hsuan Tsai, Wolfgang Schmidt

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
7.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
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  7. Article
  8. Iron Availability Influences Protein Carbonylation inInternational journal of molecular sciences · 2023
    Article
  9. Iron Nutrition in Plants: Towards a New Paradigm?Plants (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Iron sensing in plants.Frontiers in plant science · 2023
    Review
  12. Article
  13. Article
  14. pH sensors in the plant apoplast: aFrontiers in plant science · 2023
    Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Chandan Kumar GautamMolecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, Academia Sinica and National Chung-Hsing University, Taipei 11529, Taiwan.ORCID 0000-0001-5867-1868
Huei-Hsuan TsaiInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-5166-2181
Wolfgang SchmidtMolecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, Academia Sinica and National Chung-Hsing University, Taipei 11529, Taiwan.ORCID 0000-0002-7850-6832
National Chung Hsing University · TWInstitute of Plant and Microbial Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iron (Fe) is an essential mineral element that governs the composition of natural plant communities and limits crop yield in agricultural ecosystems due to its extremely low availability in most soils, particularly at alkaline pH. To extract sufficient Fe from the soil under such conditions, some plants, including Arabidopsis (Arabidopsis thaliana), secrete Fe-mobilizing phenylpropanoids, which mobilize sparingly soluble Fe hydroxides by reduction and chelation. We show here that ectopic expression of the peptides IRONMAN (IMA1) and IMA2 improves growth on calcareous soil by inducing biosynthesis and secretion of the catecholic coumarin 7,8-dihydroxy-6-methoxycoumarin (fraxetin) via increased expression of MYB72 and SCOPOLETIN 8-HYDROXYLASE, a response that is strictly dependent on elevated environmental pH (pHe). By contrast, transcription of the cytochrome P450 family protein CYP82C4, catalyzing the subsequent hydroxylation of fraxetin to sideretin, which forms less stable complexes with iron, was strongly repressed under such conditions. We concluded that IMA peptides regulate processes supporting Fe uptake at both acidic and elevated pH by controlling gene expression upstream of or in concert with a putative pHe signal, adapting the plant to prevailing edaphic conditions. This regulatory pattern confers tolerance to calcareous soils by extending the pH range in which Fe can be efficiently absorbed from the soil. Our results further suggest that pHe calibrates the activities of components of the Fe deficiency response, accentuating processes that are most efficient under the prevailing conditions. Altering the expression of IMA peptides provides a route for generating plants adapted to calcareous soils.

Indexed as

ArabidopsisEctopic Gene ExpressionGene Expression Regulation, PlantIronSoilAmino Acid SequenceArabidopsis ProteinsHydrogen-Ion ConcentrationIntracellular Signaling Peptides and ProteinsSequence AlignmentArabidopsis ProteinsAT1G47395 protein, ArabidopsisAt1g47400 protein, ArabidopsisIntracellular Signaling Peptides and ProteinsIronSoil

Identifiers

PMID34618058
PMCPMC8566206
OpenAlexW3193270837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.