Evidence map›Paper›PMID 34618008›Full record

ArticleClinical infectious diseases : an official publication of the Infectious Diseases Society of America2022

Progressive Development of Cefiderocol Resistance in Escherichia coli During Therapy is Associated With an Increase in blaNDM-5 Copy Number and Gene Expression.

Patricia J Simner, Heba H Mostafa, Yehudit Bergman, Michael Ante, Tsigereda Tekle, Ayomikun Adebayo, Stephan Beisken, Kathryn Dzintars, Pranita D Tamma

Open access · greenAbstract readCase Reports
In one paragraph

Article in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 102 citations in OpenAlex.

  1. Review
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  14. ConfrontingInfection and drug resistance · 2026
    Review
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  18. Microbiology spectrum · 2025
    Article
  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Patricia J SimnerDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Heba H MostafaDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Yehudit BergmanDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Michael AnteAres Genetics, Vienna, Austria.
Tsigereda TekleDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Ayomikun AdebayoDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Stephan BeiskenAres Genetics, Vienna, Austria.
Kathryn DzintarsDepartment of Pharmacy, Johns Hopkins Hospital, Baltimore, Maryland, USAand.
Pranita D TammaDepartment of Pediatrics, Division of Infectious Diseases, Johns Hopkins University School of Medicine, Baltimore, Maryland, USA.
Johns Hopkins University · USJohns Hopkins Hospital · USJohns Hopkins Medicine · US

Funding

Modifiable Risk Factors for the Emergence of Resistance to Pseudomonas aeruginosaR21AI153580 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TAMMA, PRANITA · 2021 to 2022
$479k
NIAID NIH HHS R21 AI153580
6 · The paper itself

Abstract

backgroundAs cefiderocol is increasingly being prescribed in clinical practice, it is critical that we understand key mechanisms contributing to acquired resistance to this agent.

methodsWe describe a patient with acute lymphoblastic leukemia and a New Delhi metallo-ß-lactamase (NDM)-5-producing Escherichia coli intra-abdominal infection in whom resistance to cefiderocol evolved approximately 2 weeks after the start of treatment. Through whole-genome sequencing (WGS), messenger RNA expression studies, and ethylenediaminetetraacetic acid inhibition analysis, we investigated the role of increased NDM-5 production and genetic mutations contributing to the development of cefiderocol resistance, using 5 sequential clinical E. coli isolates obtained from the patient.

resultsIn all 5 isolates, blaNDM-5 genes were identified. The minimum inhibitory concentrations for cefiderocol were 2, 4, and >32 μg/mL for isolates 1-2, 3, and 4-5, respectively. WGS showed that isolates 1-3 contained a single copy of the blaNDM-5 gene, whereas isolates 4 and 5 had 5 and 10 copies of the blaNDM-5 gene, respectively, on an IncFIA/FIB/IncFII plasmid. These findings were correlated with those of blaNDM-5 messenger RNA expression analysis, in which isolates 4 and 5 expressed blaNDM-5 1.7- and 2.8-fold, respectively, compared to, isolate 1. Synergy testing with the combination of ceftazidime-avibactam and aztreonam demonstrated expansion of the zone of inhibition between the disks for all isolates. The patient was successfully treated with this combination and remained infection free 1 year later.

conclusionsThe findings in our patient suggest that increased copy numbers of blaNDM genes through translocation events are used by Enterobacterales to evade cefiderocol-mediated cell death. The frequency of increased blaNDM-5 expression in contributing to cefiderocol resistance needs investigation.

Indexed as

Escherichia coliEscherichia coli InfectionsAnti-Bacterial Agentsbeta-LactamasesCefiderocolCephalosporinsDNA Copy Number VariationsDrug Resistance, Multiple, BacterialGene ExpressionHumansMicrobial Sensitivity TestsPlasmidsRNA, MessengerAnti-Bacterial Agentsbeta-LactamasesCefiderocolCephalosporinsRNA, Messengerantimicrobial resistancecefiderocolEscherichia coliNDM

Identifiers

PMID34618008
PMCPMC9402677
OpenAlexW3202131127

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.