Evidence map›Paper›PMID 34617951›Full record

ArticleGenetics and molecular biology2021

An integrated approach to identify bimodal genes associated with prognosis in câncer.

Josivan Ribeiro Justino, Clovis Ferreira Dos Reis, Andre Luis Fonseca, Sandro Jose de Souza, Beatriz Stransky

Abstract read
In one paragraph

Article in Genetics and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Josivan Ribeiro JustinoUniversidade Federal do Rio Grande do Norte (UFRN), Metrópole Digital, Centro Multiusuário de Bioinformática, Natal, RN, Brazil.
Clovis Ferreira Dos ReisUniversidade Federal do Rio Grande do Norte (UFRN), Metrópole Digital, Centro Multiusuário de Bioinformática, Natal, RN, Brazil.ORCID http://orcid.org/0000-0002-9538-9404
Andre Luis FonsecaUniversidade de São Paulo, Departamento de Genética e Biologia Evolutiva, São Paulo, SP, Brazil.
Sandro Jose de SouzaUniversidade Federal do Rio Grande do Norte (UFRN), Metrópole Digital, Centro Multiusuário de Bioinformática, Natal, RN, Brazil.
Beatriz StranskyUniversidade Federal do Rio Grande do Norte (UFRN), Metrópole Digital, Centro Multiusuário de Bioinformática, Natal, RN, Brazil.ORCID http://orcid.org/0000-0003-4506-393X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bimodal gene expression (where a gene expression distribution has two maxima) is associated with phenotypic diversity in different biological systems. A critical issue, thus, is the integration of expression and phenotype data to identify genuine associations. Here, we developed tools that allow both: i) the identification of genes with bimodal gene expression and ii) their association with prognosis in cancer patients from The Cancer Genome Atlas (TCGA). Bimodality was observed for 554 genes in expression data from 25 tumor types. Furthermore, 96 of these genes presented different prognosis when patients belonging to the two expression peaks were compared. The software to execute the method and the corresponding documentation are available at the Data access section.

Identifiers

PMID34617951
PMCPMC8495773

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.