Evidence map›Paper›PMID 34617072›Full record

ArticleMed (New York, N.Y.)2021

Complex species and strain ecology of the vaginal microbiome from pregnancy to postpartum and association with preterm birth.

Ryan M Pace, Derrick M Chu, Amanda L Prince, Jun Ma, Maxim D Seferovic, Kjersti M Aagaard

Open access · bronzeAbstract read
In one paragraph

Article in Med (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. VaginalJournal of clinical medicine · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. mSystems · 2024
    Article
  9. Article
  10. Group BFrontiers in cellular and infection microbiology · 2024
    Article
  11. Article
  12. Profiling of vaginalMicrobial genomics · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ryan M PaceDepartment of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine, Houston, TX, United States.
Derrick M ChuDepartment of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine, Houston, TX, United States.
Amanda L PrinceDepartment of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine, Houston, TX, United States.
Jun MaDepartment of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine, Houston, TX, United States.
Maxim D SeferovicDepartment of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine, Houston, TX, United States.
Kjersti M AagaardDepartment of Obstetrics & Gynecology, Division of Maternal-Fetal Medicine, Baylor College of Medicine, Houston, TX, United States.
Baylor College of Medicine · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007330 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PLON, SHARON E. · 1985 to 2019
$15.6M
Translational Research Support CoreP30ES030285 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI Fernanda Laezza, Cheryl L. Walker · 2019 to 2026
$14.7M
Research Education and Career Horizons ProgramK12GM084897 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SIFERS, RICHARD NORMAN, SLAUGHTER, GAYLE · 2008 to 2016
$8.3M
Conserved Fetal Epigenomic Signatures in a Primate Model of Maternal ObesityR01DK089201 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI AAGAARD, KJERSTI MARIE · 2012 to 2021
$5.1M
Source of the Placental MicrobiomeR01HD091731 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI AAGAARD, KJERSTI MARIE · 2017 to 2021
$3.4M
Training Program in Translational Biology and Molecular MedicineT32GM088129 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROONEY, CLIONA M., VAN DEN VEYVER, IGNATIA B · 2010 to 2019
$3.0M
A Multi'omics Approach towards Deciphering the Influence of the Microbiome on PreR01NR014792 · NINR · BAYLOR COLLEGE OF MEDICINE · PI AAGAARD, KJERSTI MARIE · 2013 to 2017
$2.7M
A Microbial Genome Reference Platform for MetagenomicsU54HG004973 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A, HIGHLANDER, SARAH KATHERINE · 2009 to 2010
$1.8M
Longitudinal Neural Imaging and Functional Resilience After Hurricane HarveyR21ES029462 · NIEHS · BAYLOR COLLEGE OF MEDICINE · PI AAGAARD, KJERSTI MARIE · 2018 to 2020
$1.2M
NHGRI NIH HHS U54 HG004973NICHD NIH HHS R01 HD091731NIDDK NIH HHS R01 DK089201NIEHS NIH HHS P30 ES030285NIEHS NIH HHS R21 ES029462NIGMS NIH HHS K12 GM084897NIGMS NIH HHS T32 GM007330NIGMS NIH HHS T32 GM088129NINR NIH HHS R01 NR014792
6 · The paper itself

Abstract

background

methodsWe performed a metagenomic analysis of the complex ecology of the vaginal econiche during and after pregnancy in a large U.S. based longitudinal cohort of women who were initially sampled in the third trimester of pregnancy, then validated key findings in a second cohort of women initially sampled in the second trimester of pregnancy.

findingsFirst, we resolved microbial species and strains, interrogated their co-occurrence patterns, and probed the relationship between keystone species and preterm birth outcomes. Second, to determine the role of human heredity in shaping vaginal microbial ecology in relation to preterm birth, we performed a mtDNA-bacterial species association analysis. Finally, we explored the clinical utility of metagenomics in detection and co-occurrence patterns for the pathobiont Group B

conclusionsOur highly refined resolutions of the vaginal ecology during and post-pregnancy provide insights into not only structural and functional community dynamics, but highlight the capacity of metagenomics to reveal finer aspects of the vaginal microbial ecologic framework.

fundingNIH-NINR R01NR014792, NIH-NICHD R01HD091731, NIH National Children's Study Formative Research, Burroughs Wellcome Fund Preterm Birth Initiative, March of Dimes Preterm Birth Research Initiative, NIH-NIGMS (K12GM084897, T32GM007330, T32GM088129).

Indexed as

MicrobiotaPremature BirthBacteriaChildFemaleHumansInfant, NewbornLactobacillusPostpartum PeriodPregnancyRNA, Ribosomal, 16SVaginaRNA, Ribosomal, 16S16S rRNAbacteriaGBSLactobacillusmetagenomicsmicrobiomepreterm birthstrainsstreptococcivagina

Identifiers

PMID34617072
PMCPMC8491999
OpenAlexW3177018090

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.